9v89
Crystal structure of d(CGTTAACG)2 with a five-carbon linker containing quinoxaline-acridine asymmetric intercalator compound
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 9v89 |
| deposition_date | 2025-05-29 |
| title | Crystal structure of d(CGTTAACG)2 with a five-carbon linker containing quinoxaline-acridine asymmetric intercalator compound |
| keywords | Ligand-DNA complex, Asymmetric intercalator, Bis-intercalation, Quinoxaline, Acridine, DNA; DNA |
| method | X-RAY DIFFRACTION |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 12.30 Å |
| rg_electron | 11.60 Å |
| i0 | 2076190.00 |
| molecular_weight | 5378.0 kDa |
| excluded_volume | 4354 ų |
| envelope_volume | 7867 ų |
| shell_volume | 6364 ų |
| envelope_diameter | 41.7 Å |
| shell_rg | 15.91 Å |
| envelope_rg | 12.09 Å |
| shape_rg | 11.49 Å |
| total_rg | 12.47 Å |
| total_atoms | 371 |
| n_residues | 16 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 41.2 Å |
| rg_real | 12.30 Å |
| rg_real_error | 0.33 Å |
| i0_real | 2.0760e+06 |
| i0_real_error | 2.2230e+04 |
| rg_reciprocal | 12.30 Å |
| i0_reciprocal | 2076000.0000 |
| total_estimate | 0.8006 |
| solution_quality | GOOD a GOOD solution |
| n_peaks | 2 |
| r_peak_primary | 15.7 Å |
| skewness | 0.343 |
| kurtosis | -0.151 |
| angular_range | — – 0.5000 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 95240.0000 |
| n_real_points | 80 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.812; Stabil: 0.998; Sysdev: 1.000; Positv: 1.000; Valcen: 0.975; Smooth: 0.000 |