9vfe
Solution structure of XPC binding domain of hHR23B (apo form)
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 9vfe |
| deposition_date | 2025-06-11 |
| last_revision | 2025-10-01 |
| title | Solution structure of XPC binding domain of hHR23B (apo form) |
| keywords | metal-free form, METAL BINDING PROTEIN; METAL BINDING PROTEIN |
| method | SOLUTION NMR |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 11.96 Å |
| rg_electron | 11.41 Å |
| i0 | 103961000.00 |
| molecular_weight | 80461.0 kDa |
| excluded_volume | 98977 ų |
| envelope_volume | 15511 ų |
| shell_volume | 10601 ų |
| envelope_diameter | 40.4 Å |
| shell_rg | 18.23 Å |
| envelope_rg | 12.71 Å |
| shape_rg | 11.41 Å |
| total_rg | 11.67 Å |
| total_atoms | 11180 |
| n_residues | 720 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 38.5 Å |
| rg_real | 11.85 Å |
| rg_real_error | 0.26 Å |
| i0_real | 1.0400e+08 |
| i0_real_error | 9.8120e+05 |
| rg_reciprocal | 11.86 Å |
| i0_reciprocal | 104000000.0000 |
| total_estimate | 0.8711 |
| solution_quality | GOOD a GOOD solution |
| n_peaks | 2 |
| r_peak_primary | 16.1 Å |
| skewness | -0.096 |
| kurtosis | -0.464 |
| angular_range | — – 0.5000 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 79370.0000 |
| n_real_points | 80 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.793; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.993; Smooth: 0.951 |