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9vfs

Structure of Coxsackievirus A6 Altered-particles

Method: ELECTRON MICROSCOPY D_max: 95.1 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	9vfs
deposition_date	2025-06-11
title	Structure of Coxsackievirus A6 Altered-particles
keywords	coxsackievirus A6, KRM1, receptor, VIRUS; VIRUS
method	ELECTRON MICROSCOPY

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	28.49 Å
rg_electron	27.64 Å
i0	92101600.00
molecular_weight	76285.0 kDa
excluded_volume	95563 Å³
envelope_volume	114550 Å³
shell_volume	34478 Å³
envelope_diameter	101.6 Å
shell_rg	34.98 Å
envelope_rg	28.39 Å
shape_rg	27.61 Å
total_rg	28.43 Å
total_atoms	5379
n_residues	695
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	95.1 Å
rg_real	28.50 Å
rg_real_error	0.70 Å
i0_real	9.2100e+07
i0_real_error	1.4760e+06
rg_reciprocal	28.50 Å
i0_reciprocal	92100000.0000
total_estimate	0.8770
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	34.0 Å
skewness	0.376
kurtosis	-0.253
angular_range	— – 0.2800 Å⁻¹
current_alpha	0.0000
highest_alpha	17950000.0000
n_real_points	57
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.847; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.983; Smooth: 0.873

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4. Crystallography & Experiment

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5. Entities & Polymer Info (3)

Entity 1 polymer

description	Genome polyprotein
formula_weight	33568.4 kDa
src_method	nat
entity_count	1

Polymer

type	polypeptide(L)
strand_id	A
atom_count	5379

NDPITNAVESAVSALADTTISRVTAANTAASTHSLGTGRVPALQAAETGASSNSSDENLIETRCVMNRNGVNEASVEHFYSRAGLVGVVEVKDSGTSLDGYTVWPIDVMGFVQQRRKLELSTYMRFDAEFTFVSNLNNSTTPGMLLQYMYVPPGAPKPDSRKSYQWQTATNPSVFAKLSDPPPQVSVPFMSPATAYQWFYDGYPTFGEHKQATNLQYGQCPNNMMGHFAIRTVSESTTGKNIHVRVYMRIKHVRAWVPRPLRSQAYMVKNYPTYSQTITNTATDRASITTTDYEGGVPASPQRTS

Entity 2 polymer

description	Genome polyprotein
formula_weight	28138.6 kDa
ec_number	3.4.22.29,3.6.1.15,3.4.22.28,2.7.7.48
src_method	nat
entity_count	1

Polymer

type	polypeptide(L)
strand_id	B

SPSVEACGYSDRVAQLTVGNSTITTQEAANIVLSYGEWPEYCPSTDATAVDKPTRPDVSVNRFYTLSTKSWKTESTGWYWKFPDVLNDTGVFGQNAQFHYLYRSGFCMHVQCNASKFHQGALLVAAIPEFVIAASSPATKPNSQGLYPDFAHTNPGKDGQEFRDPYVLDAGIPLSQALIFPHQWINLRTNNCATIIMPYINALPFDSALNHSNFGLVVIPISPLKYCNGATTEVPITLTIAPLNSEFSGLRQAIKQ

Entity 3 polymer

description	Genome polyprotein
formula_weight	26324.8 kDa
ec_number	3.4.22.29,3.6.1.15,3.4.22.28,2.7.7.48
src_method	nat
entity_count	1

Polymer

type	polypeptide(L)
strand_id	C

GFPTELKPGTNQFLTTDDGTSPPILPGFEPTPLIHIPGEFTSLLDLCQVETILEVNNTTGTTGVSRLLIPVRAQNNVDQLCASFQVDPGRNGPWQSTMVGQICRYYTQWSGSLKVTFMFTGSFMATGKMLIAYTPPGSAQPTTREAAMLGTHIVWDFGLQSSVTLVIPWISNTHFRAVKTGGVYDYYATGIVTIWYQTNFVVPPDTPTEANIIALGAAQKNFTLKLCKDTDEIQQTAEYQ

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6. Citations (1)

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resolution	2.490 Å
resolution_low	— Å
r_factor	—
r_work	—
r_free	—

resolution	2.49 Å
resolution_method	—
num_particles	51465

fit	/app/data/saxs_computation/vf/9vfs/9vfs.fit
pddf	/app/data/pr_computation/vf/9vfs/9vfs.pr.out
profile	/app/data/saxs_computation/vf/9vfs/9vfs.dat

Structure of Coxsackievirus A6 Altered-particles

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Refinement

EM 3D

5. Entities & Polymer Info (3)

Entity 1 polymer

Polymer

Entity 2 polymer

Polymer

Entity 3 polymer

Polymer

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)