9vgd
Helical assembly of TRADD death domain
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 9vgd |
| deposition_date | 2025-06-13 |
| title | Helical assembly of TRADD death domain |
| keywords | Death domain, Inflammation, Tumor necrosis factor, APOPTOSIS; APOPTOSIS |
| method | ELECTRON MICROSCOPY |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 49.49 Å |
| rg_electron | 49.79 Å |
| i0 | 1735400000.00 |
| molecular_weight | 343870.0 kDa |
| excluded_volume | 430210 ų |
| envelope_volume | 574170 ų |
| shell_volume | 95717 ų |
| envelope_diameter | 182.1 Å |
| shell_rg | 52.87 Å |
| envelope_rg | 49.95 Å |
| shape_rg | 49.77 Å |
| total_rg | 49.97 Å |
| total_atoms | 24276 |
| n_residues | 2996 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 173.9 Å |
| rg_real | 49.84 Å |
| rg_real_error | 1.97 Å |
| i0_real | 1.7350e+09 |
| i0_real_error | 3.5740e+07 |
| rg_reciprocal | 49.49 Å |
| i0_reciprocal | 1735000000.0000 |
| total_estimate | 0.8246 |
| solution_quality | GOOD a GOOD solution |
| n_peaks | 1 |
| r_peak_primary | 48.9 Å |
| skewness | 0.555 |
| kurtosis | -0.209 |
| angular_range | — – 0.1600 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 1130000000.0000 |
| n_real_points | 33 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.650; Stabil: 0.999; Sysdev: 1.000; Positv: 1.000; Valcen: 0.972; Smooth: 0.795 |