9vr0
NMR solution structure of termini-truncated oxidized cytochrome c552 from Thioalkalivibrio paradoxus
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 9vr0 |
| deposition_date | 2025-07-05 |
| title | NMR solution structure of termini-truncated oxidized cytochrome c552 from Thioalkalivibrio paradoxus |
| keywords | thiocyanate dehydrogenase electron acceptor, cytochrome c552, class I cytochrome c, hemeprotein, periplasmic, ELECTRON TRANSPORT; ELECTRON TRANSPORT |
| method | SOLUTION NMR |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 13.74 Å |
| rg_electron | 13.30 Å |
| i0 | 1122060000.00 |
| molecular_weight | 262840.0 kDa |
| excluded_volume | 319090 ų |
| envelope_volume | 28410 ų |
| shell_volume | 15146 ų |
| envelope_diameter | 52.8 Å |
| shell_rg | 21.81 Å |
| envelope_rg | 16.29 Å |
| shape_rg | 13.31 Å |
| total_rg | 13.41 Å |
| total_atoms | 35460 |
| n_residues | 2320 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 46.6 Å |
| rg_real | 13.65 Å |
| rg_real_error | 0.30 Å |
| i0_real | 1.1220e+09 |
| i0_real_error | 1.2520e+07 |
| rg_reciprocal | 13.66 Å |
| i0_reciprocal | 1122000000.0000 |
| total_estimate | 0.7892 |
| solution_quality | GOOD a GOOD solution |
| n_peaks | 2 |
| r_peak_primary | 17.7 Å |
| skewness | 0.164 |
| kurtosis | -0.264 |
| angular_range | — – 0.5000 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 449000.0000 |
| n_real_points | 80 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.752; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.999; Smooth: 0.000 |