9w1v
Crystal structure of RD3796, a de novo designed rubredoxin from the template rubredoxin c. p.
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 9w1v |
| deposition_date | 2025-07-26 |
| last_revision | 2026-06-10 |
| title | Crystal structure of RD3796, a de novo designed rubredoxin from the template rubredoxin c. p. |
| keywords | Rubredoxin, de novo designed, METAL BINDING PROTEIN; METAL BINDING PROTEIN |
| method | X-RAY DIFFRACTION |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 10.92 Å |
| rg_electron | 9.54 Å |
| i0 | 760792.00 |
| molecular_weight | 5607.0 kDa |
| excluded_volume | 6941 ų |
| envelope_volume | 7116 ų |
| shell_volume | 6637 ų |
| envelope_diameter | 29.7 Å |
| shell_rg | 14.58 Å |
| envelope_rg | 9.82 Å |
| shape_rg | 9.50 Å |
| total_rg | 11.07 Å |
| total_atoms | 757 |
| n_residues | 51 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 33.9 Å |
| rg_real | 10.84 Å |
| rg_real_error | 0.21 Å |
| i0_real | 7.6080e+05 |
| i0_real_error | 7.4470e+03 |
| rg_reciprocal | 10.84 Å |
| i0_reciprocal | 760800.0000 |
| total_estimate | 0.8950 |
| solution_quality | GOOD a GOOD solution |
| n_peaks | 2 |
| r_peak_primary | 15.0 Å |
| skewness | 0.029 |
| kurtosis | -0.377 |
| angular_range | — – 0.5000 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 75850.0000 |
| n_real_points | 80 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.886; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.992; Smooth: 0.983 |