9xwu
Crystal structure of E.coli CDP-diacylglycerol pyrophosphatase (Cdh) complexed with AMP
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 9xwu |
| deposition_date | 2025-11-28 |
| title | Crystal structure of E.coli CDP-diacylglycerol pyrophosphatase (Cdh) complexed with AMP |
| keywords | ;CDP-diacylglycerol, Phosphatidic acid, Bitopic membrane protein, CDP-DAG hydrolase, bacterial phospholipid metabolism, AMP bound structure, inhibitor bound, HYDROLASE ;; HYDROLASE |
| method | X-RAY DIFFRACTION |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 40.68 Å |
| rg_electron | 40.35 Å |
| i0 | 43152900.00 |
| molecular_weight | 51496.0 kDa |
| excluded_volume | 63652 ų |
| envelope_volume | 93551 ų |
| shell_volume | 19116 ų |
| envelope_diameter | 121.1 Å |
| shell_rg | 47.63 Å |
| envelope_rg | 38.06 Å |
| shape_rg | 40.34 Å |
| total_rg | 40.78 Å |
| total_atoms | 3616 |
| n_residues | 446 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 112.8 Å |
| rg_real | 41.02 Å |
| rg_real_error | 1.28 Å |
| i0_real | 4.3150e+07 |
| i0_real_error | 8.0240e+05 |
| rg_reciprocal | 40.68 Å |
| i0_reciprocal | 43140000.0000 |
| total_estimate | 0.5445 |
| solution_quality | REASONABLE a REASONABLE solution |
| n_peaks | 3 |
| r_peak_primary | 23.1 Å |
| skewness | 0.148 |
| kurtosis | -1.484 |
| angular_range | — – 0.1950 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 4346000.0000 |
| n_real_points | 40 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.012; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.040; Smooth: 0.000 |