9y59
Crystal structure of CSD20f3B, a designed switching binder to CSD20f3A
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 9y59 |
| deposition_date | 2025-09-04 |
| last_revision | 2025-09-17 |
| title | Crystal structure of CSD20f3B, a designed switching binder to CSD20f3A |
| keywords | de novo protein, design model, Effector, kinetics and dynamics, Protein-protein interactions; DE NOVO PROTEIN |
| method | X-RAY DIFFRACTION |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 37.14 Å |
| rg_electron | 36.47 Å |
| i0 | 369623000.00 |
| molecular_weight | 147590.0 kDa |
| excluded_volume | 182510 ų |
| envelope_volume | 236910 ų |
| shell_volume | 53984 ų |
| envelope_diameter | 124.4 Å |
| shell_rg | 42.63 Å |
| envelope_rg | 36.29 Å |
| shape_rg | 36.47 Å |
| total_rg | 36.85 Å |
| total_atoms | 10366 |
| n_residues | 1310 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 119.3 Å |
| rg_real | 37.06 Å |
| rg_real_error | 0.71 Å |
| i0_real | 3.6960e+08 |
| i0_real_error | 5.3970e+06 |
| rg_reciprocal | 37.12 Å |
| i0_reciprocal | 369600000.0000 |
| total_estimate | 0.8962 |
| solution_quality | GOOD a GOOD solution |
| n_peaks | 1 |
| r_peak_primary | 44.4 Å |
| skewness | 0.259 |
| kurtosis | -0.469 |
| angular_range | — – 0.2150 Å−1 |
| current_alpha | 0.0001 |
| highest_alpha | 134400000.0000 |
| n_real_points | 44 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.922; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.998; Smooth: 0.883 |