9ydf
Structure of the cyclic nucleotide binding domain of SLC9C1
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 9ydf |
| deposition_date | 2025-09-22 |
| last_revision | 2025-11-12 |
| title | Structure of the cyclic nucleotide binding domain of SLC9C1 |
| keywords | ;Transporter, cyclic nucleotide binding domain, sperm-specific protein, SGC, TRANSPORT PROTEIN, Structural Genomics, PSI-2, Protein Structure Initiative, Structural Genomics Consortium ;; TRANSPORT PROTEIN |
| method | X-RAY DIFFRACTION |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 15.71 Å |
| rg_electron | 14.31 Å |
| i0 | 3788760.00 |
| molecular_weight | 14494.0 kDa |
| excluded_volume | 18445 ų |
| envelope_volume | 20682 ų |
| shell_volume | 12379 ų |
| envelope_diameter | 45.9 Å |
| shell_rg | 19.87 Å |
| envelope_rg | 14.49 Å |
| shape_rg | 14.31 Å |
| total_rg | 15.50 Å |
| total_atoms | 1017 |
| n_residues | 131 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 47.5 Å |
| rg_real | 15.60 Å |
| rg_real_error | 0.20 Å |
| i0_real | 3.7890e+06 |
| i0_real_error | 3.8670e+04 |
| rg_reciprocal | 15.61 Å |
| i0_reciprocal | 3789000.0000 |
| total_estimate | 0.9091 |
| solution_quality | EXCELLENT a EXCELLENT solution |
| n_peaks | 1 |
| r_peak_primary | 46.9 Å |
| skewness | 0.056 |
| kurtosis | -0.500 |
| angular_range | — – 0.5000 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 388300.0000 |
| n_real_points | 80 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.948; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.989; Smooth: 0.979 |