9zdo
Crystal structure of Zn-substituted rubredoxin from psychrophilic clostridia Clostridium psychrophilum
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 9zdo |
| deposition_date | 2025-11-26 |
| title | Crystal structure of Zn-substituted rubredoxin from psychrophilic clostridia Clostridium psychrophilum |
| keywords | rubredoxin, electron transfer, psychrophilic, ELECTRON TRANSPORT; ELECTRON TRANSPORT |
| method | X-RAY DIFFRACTION |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 11.00 Å |
| rg_electron | 9.78 Å |
| i0 | 761055.00 |
| molecular_weight | 6096.0 kDa |
| excluded_volume | 7751 ų |
| envelope_volume | 7786 ų |
| shell_volume | 7012 ų |
| envelope_diameter | 32.8 Å |
| shell_rg | 14.99 Å |
| envelope_rg | 10.11 Å |
| shape_rg | 9.68 Å |
| total_rg | 11.60 Å |
| total_atoms | 418 |
| n_residues | 52 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 33.8 Å |
| rg_real | 10.91 Å |
| rg_real_error | 0.19 Å |
| i0_real | 7.6110e+05 |
| i0_real_error | 7.5530e+03 |
| rg_reciprocal | 10.91 Å |
| i0_reciprocal | 761100.0000 |
| total_estimate | 0.8938 |
| solution_quality | GOOD a GOOD solution |
| n_peaks | 1 |
| r_peak_primary | 32.9 Å |
| skewness | 0.043 |
| kurtosis | -0.350 |
| angular_range | — – 0.5000 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 93780.0000 |
| n_real_points | 80 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.896; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.987; Smooth: 0.941 |