{
  "code": "SASDX39",
  "status": "Published",
  "type_of_curve": "SEC-SAS",
  "angular_unit": "1/nm",
  "project": {
    "title": "Dynamic assembly of a large multidomain ribozyme visualized by cryo-electron microscopy.",
    "publication": {
      "title": "Dynamic assembly of a large multidomain ribozyme visualized by cryo-electron microscopy.",
      "author_list": "Jadhav S, Maiorca M, Manigrasso J, Saha S, Rakitch A, Muscat S, Mulvaney T, De Vivo M, Topf M, Marcia M",
      "journal": "Nat Commun",
      "doi": "10.1038/s41467-025-65502-8",
      "pmid": "41309593",
      "published_date": "2025 Nov 27"
    },
    "status": "released",
    "submitted_date": "2025-09-15",
    "released_date": "2025-10-26"
  },
  "pddf_data": "https://www.sasbdb.org/media/p_of_R_files/SASDX39.out",
  "intensities_data": "https://www.sasbdb.org/media/intensities_files/SASDX39.dat",
  "intensities_log_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDX39_dat_img.png",
  "intensities_kratky_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDX39_kratky_img.png",
  "pddf_plot": "https://www.sasbdb.org/media/p_of_R_files/pofr_images/SASDX39_pofr_img.png",
  "intensities_guinier_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDX39_guinier_img.png",
  "sascif_data": "https://www.sasbdb.org/media/sascif/sascif_files/SASDX39.sascif",
  "experiment": {
    "instrument": {
      "detector": {
        "type": null,
        "name": "Pilatus3 2M",
        "resolution": 0.172
      },
      "name": "ESRF",
      "city": "Grenoble",
      "country": "France",
      "beamline_name": "BM29",
      "beam_geometry": "point",
      "type_of_source": "X-ray synchrotron",
      "point_source": null,
      "line_collimation": null,
      "sample_path_length": null,
      "line_collimation_slitlength": null,
      "line_collimation_integrationwidth": null,
      "xray_energy": null,
      "beam_profile_ah": null,
      "beam_profile_al": null
    },
    "sample": {
      "molecule": [
        {
          "long_name": "Group IIC Intron Domain 1",
          "short_name": "D1",
          "sequence": "GGGUUAUGUGUGCCCGGCAUGGGUGCAGUCUAUAGGGUGAGAGUCCCGAACUGUGAAGGCAGAAGUAACAGUUAGCCUAACGCAAGGGUGUCCGUGGCGACAUGGAAUCUGAAGGAAGCGGACGGCAAACCUUCGGUCUGAGGAACACGAACUUCAUAUGAGGCUAGGUAUCAAUGGAUGAGUUUGCAUAACAAAACAAAGUCCUUUCUGCCAAAGUUGGUACAGAGUAAAUGAAGCAGAUUGAUGAAGGGAAAGACUGCAUUCUUACCCGGG",
          "organism": "Oceanobacillus iheyensis",
          "uniprot_code": null,
          "uniprot_range_first": null,
          "uniprot_range_last": null,
          "oligomerization": "monomer",
          "molecular_type": "RNA",
          "uniprot_sequence": "",
          "mw": 89.0,
          "total_mw": 89.0,
          "number_molecules": 1,
          "complex_state": false,
          "deuteration": null,
          "molecule_source": "biological",
          "molecule_description": ""
        }
      ],
      "buffer": {
        "name": "10 mM MgCl2, 5 mM Na-MES",
        "concentration_unit": null,
        "comment": null,
        "additive": null,
        "concentration": null,
        "pka": null,
        "ph": 6.5,
        "deuteration": null
      },
      "purity_method": null,
      "name": "Group IIC Intron Domain 1",
      "ext_coefficient": null,
      "contrast": null,
      "specific_vol": null,
      "dry_vol": null,
      "absorbption": null,
      "deuteration": null,
      "mixture": null
    },
    "contributor": [
      {
        "affiliation": [
          {
            "short_name": null,
            "address": null,
            "full_name": "Uppsala University",
            "webpage": null
          }
        ],
        "contributor_name": "Shekhar",
        "contributor_surname": "Jadhav",
        "orcid": "https://orcid.org/0009-0009-4682-7568"
      }
    ],
    "concentration_method": null,
    "concentration_unit": null,
    "date": "2021-07-07",
    "storage_temperature": 25.0,
    "cell_temperature": 25.0,
    "exposure_time": 2.0,
    "number_of_frames": 1700,
    "wavelength": 0.9918,
    "sample_detector_distance": 2.827,
    "concentration_min": null,
    "concentration_max": 1.13,
    "sample_volume": 95.0,
    "flow_rate": 0.5,
    "s_min": 0.044,
    "s_max": 5.205,
    "total_exposure_time": null,
    "seccolumn": null
  },
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        {
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          "pdb_link": [],
          "model_title": null,
          "type_of_model": "dummy",
          "software_version": "dammif (r12736)",
          "model_data": "https://www.sasbdb.org/media/pdb_file/SASDX39_fit1_model1.pdb",
          "model_mw": null,
          "bead_radius": 2.0,
          "log": null,
          "symmetry": null,
          "comment": null,
          "user": 1274
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      ],
      "fit_unit": "1/A",
      "fit_plot": "https://www.sasbdb.org/media/fitting_files/scattering_plots/SASDX39_fit1_fixed_fit_img.png",
      "software": "DAMMIF",
      "chi_square_value": 1.072,
      "p_value": 0.1738,
      "fit_residual_plot": "SASDX39_fit1_fitresiduals_img.png",
      "fit_data": "https://www.sasbdb.org/media/fitting_files/SASDX39_fit1.fir",
      "fit_log": null,
      "software_version": null,
      "description": ""
    }
  ],
  "estimated_volume_method": null,
  "pddf_software": "ATSAS GNOM",
  "pddf_software_version": "5.0",
  "i0_calibration_standard": null,
  "description": null,
  "experiment_description": null,
  "tags": [],
  "intensity_unit": "1/cm",
  "experimental_mw": 113.1,
  "experimental_mw_error": null,
  "guinier_i0_mw": null,
  "guinier_i0_mw_error": null,
  "porod_mw": null,
  "porod_mw_error": null,
  "pddf_i0": 23.69,
  "pddf_i0_error": null,
  "guinier_i0": 23.6779,
  "guinier_i0_error": null,
  "pddf_rg": 3.765,
  "pddf_rg_error": null,
  "guinier_rg": 3.797,
  "guinier_rg_error": 0.201,
  "pddf_dmax": 12.98,
  "pddf_dmax_error": null,
  "porod_volume": 187.58,
  "porod_volume_error": null,
  "estimated_volume": null,
  "estimated_volume_error": null,
  "guinier_point_first": 16,
  "guinier_point_last": 36,
  "pddf_point_first": null,
  "pddf_point_last": null,
  "i0_calibration_standard_data": null,
  "intensities_log_log_plot": "SASDX39_datloglog_img.png",
  "symmetry": null,
  "last_modified": "2025-11-28T16:19:38.013155+01:00",
  "bragg_peak": []
}