{
  "code": "SASDA49",
  "status": "Published",
  "type_of_curve": "Extrapolated to infinite dilution",
  "angular_unit": "1/nm",
  "project": {
    "title": "Analysis of self-assembly of S-layer protein slp-B53 from Lysinibacillus sphaericus.",
    "publication": {
      "title": "Analysis of self-assembly of S-layer protein slp-B53 from Lysinibacillus sphaericus.",
      "author_list": "Liu J, Falke S, Drobot B, Oberthuer D, Kikhney A, Guenther T, Fahmy K, Svergun D, Betzel C, Raff J",
      "journal": "Eur Biophys J",
      "doi": "10.1007/s00249-016-1139-9",
      "pmid": "27270294",
      "published_date": "2017 Jan"
    },
    "status": "released",
    "submitted_date": "2015-07-29",
    "released_date": "2016-06-08"
  },
  "pddf_data": "https://www.sasbdb.org/media/p_of_R_files/SASDA49.out",
  "intensities_data": "https://www.sasbdb.org/media/intensities_files/SASDA49.dat",
  "intensities_log_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDA49_dat_img.png",
  "intensities_kratky_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDA49_kratky_img.png",
  "pddf_plot": "https://www.sasbdb.org/media/p_of_R_files/pofr_images/SASDA49_pofr_img.png",
  "intensities_guinier_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDA49_guinier_img.png",
  "sascif_data": "https://www.sasbdb.org/media/sascif/sascif_files/SASDA49.sascif",
  "experiment": {
    "instrument": {
      "detector": {
        "type": null,
        "name": "Pilatus 2M",
        "resolution": null
      },
      "name": "PETRA III",
      "city": "DESY; Hamburg",
      "country": "Germany",
      "beamline_name": "EMBL P12",
      "beam_geometry": null,
      "type_of_source": "X-ray synchrotron",
      "point_source": null,
      "line_collimation": null,
      "sample_path_length": null,
      "line_collimation_slitlength": null,
      "line_collimation_integrationwidth": null,
      "xray_energy": null,
      "beam_profile_ah": null,
      "beam_profile_al": null
    },
    "sample": {
      "molecule": [
        {
          "long_name": "S-layer protein",
          "short_name": "Slp1",
          "sequence": "manqpkkykkfvataatatlvasaivpvasaagfsdvagndhevainalveagiingyad\r\ngtfkpnqsinrgqvvkllgrwleaqgqeipadwetkqrftdlpvtaeaelvkyaalakda\r\ngvfagsngnlnhtqtmqrqqmavvlvraikeissvdlvadykkagfvteitdleaaysae\r\nqrnaivaleyagitnvskfnpassitrgqfasflhrtinnvmepeagvstvkainnttve\r\nvtfdtevdnvqalnflisdlevknaavkqtnkkvvvlttaaqtadkeytvslgedkigtf\r\nkgiaavnptkvemvssatqgklgqqvtvkaqvtvaegqskagipvtfyvpgkndavypti\r\ntgeaftdengvasysytryaagtdavtayatgdrskfatghvfwgvdtilaieevttgat\r\ninnganktykivyknattgkpeanktfnvsflenidvtsnklanatvngvavsqlsnasv\r\nvkaaqittdskgeatftvsgtnaevtpvvfeaeaivtsgsttvtgysqkysasslqttaa\r\nkvkfgalqaeytidvtreggevaargvnngreykvtvkdkdgklakneiinvafnedldr\r\nvistetkayfidvdkddkqtisstpskisvktndkgeatfvigsdkendyatpvawidin\r\nssnakdgqldegepktiaqishfqdayldggavkaylapkfdksvtefkgnetatfkasl\r\nvnqsgkdmpntsiknvtytifntgsndvqvngqvispnrsytvssetlkstdltvtsvng\r\nkttsvkviatgvakntdgkdyaftskeatakftsltdvgtqitadvvevndkelvfagkd\r\npislkdakfyniygaelvgvdafkddlvnnatyatgvvvtftedkdgkkafrvaragteg\r\nkvnvgalkltnaditvasspattttaatasitltvgetlvinnqsytynagagtadanhy\r\nnslvdlagkisadsktggvkavvnagstgldltgnakgenftykigaltavstingvvgk\r\ndavdqqitftfsaavnvkandsvlingtvagtvasvsgskvvvkiaqasaiptttaitaf\r\ntvngtvlkskltnsdvtigsitlk",
          "organism": "Lysinibacillus sphaericus",
          "uniprot_code": "M4N8T6",
          "uniprot_range_first": null,
          "uniprot_range_last": null,
          "oligomerization": "monomer",
          "molecular_type": "protein",
          "uniprot_sequence": "MANQPKKYKKFVATAATATLVASAIVPVASAAGFSDVAGNDHEVAINALVEAGIINGYAD\nGTFKPNQSINRGQVVKLLGRWLEAQGQEIPADWETKQRFTDLPVTAEAELVKYAALAKDA\nGVFAGSNGNLNHTQTMQRQQMAVVLVRAIKEISSVDLVADYKKAGFVTEITDLEAAYSAE\nQRNAIVALEYAGITNVSKFNPASSITRGQFASFLHRTINNVMEPEAGVSTVKAINNTTVE\nVTFDTEVDNVQALNFLISDLEVKNAAVKQTNKKVVVLTTAAQTADKEYTVSLGEDKIGTF\nKGIAAVNPTKVEMVSSATQGKLGQQVTVKAQVTVAEGQSKAGIPVTFYVPGKNDAVYPTI\nTGEAFTDENGVASYSYTRYAAGTDAVTAYATGDRSKFATGHVFWGVDTILAIEEVTTGAT\nINNGANKTYKIVYKNATTGKPEANKTFNVSFLENIDVTSNKLANATVNGVAVSQLSNASV\nVKAAQITTDSKGEATFTVSGTNAEVTPVVFEAEAIVTSGSTTVTGYSQKYSASSLQTTAA\nKVKFGALQAEYTIDVTREGGEVAARGVNNGREYKVTVKDKDGKLAKNEIINVAFNEDLDR\nVISTETKAYFIDVDKDDKQTISSTPSKISVKTNDKGEATFVIGSDKENDYATPVAWIDIN\nSSNAKDGQLDEGEPKTIAQISHFQDAYLDGGAVKAYLAPKFDKSVTEFKGNETATFKASL\nVNQSGKDMPNTSIKNVTYTIFNTGSNDVQVNGQVISPNRSYTVSSETLKSTDLTVTSVNG\nKTTSVKVIATGVAKNTDGKDYAFTSKEATAKFTSLTDVGTQITADVVEVNDKELVFAGKD\nPISLKDAKFYNIYGAELVGVDAFKDDLVNNATYATGVVVTFTEDKDGKKAFRVARAGTEG\nKVNVGALKLTNADITVASSPATTTTAATASITLTVGETLVINNQSYTYNAGAGTADANHY\nNSLVDLAGKISADSKTGGVKAVVNAGSTGLDLTGNAKGENFTYKIGALTAVSTINGVVGK\nDAVDQQITFTFSAAVNVKANDSVLINGTVAGTVASVSGSKVVVKIAQASAIPTTTAITAF\nTVNGTVLKSKLTNSDVTIGSITLK",
          "mw": 116.01,
          "total_mw": 116.0,
          "number_molecules": 1,
          "complex_state": false,
          "deuteration": null,
          "molecule_source": "biological",
          "molecule_description": null
        }
      ],
      "buffer": {
        "name": "Water",
        "concentration_unit": null,
        "comment": null,
        "additive": null,
        "concentration": null,
        "pka": null,
        "ph": 7.0,
        "deuteration": null
      },
      "purity_method": null,
      "name": "Cation-free slp-B53",
      "ext_coefficient": null,
      "contrast": null,
      "specific_vol": null,
      "dry_vol": null,
      "absorbption": null,
      "deuteration": null,
      "mixture": false
    },
    "contributor": [
      {
        "affiliation": [
          {
            "short_name": "EMBL-Hamburg",
            "address": "Notkestraße 85, Geb. 25A, 22607 Hamburg, Deutschland, Germany",
            "full_name": "European Molecular Biology Laboratory (EMBL) - Hamburg outstation",
            "webpage": "http://www.embl-hamburg.de/index.php"
          }
        ],
        "contributor_name": "Al",
        "contributor_surname": "Kikhney",
        "orcid": "https://orcid.org/0000-0003-1321-3956"
      }
    ],
    "concentration_method": null,
    "concentration_unit": "mg/ml",
    "date": "2015-06-02",
    "storage_temperature": 20.0,
    "cell_temperature": 10.0,
    "exposure_time": 0.05,
    "number_of_frames": 20,
    "wavelength": 0.12,
    "sample_detector_distance": 3.1,
    "concentration_min": 1.0,
    "concentration_max": 7.5,
    "sample_volume": null,
    "flow_rate": null,
    "s_min": 0.104,
    "s_max": 4.283,
    "total_exposure_time": 1.0,
    "seccolumn": null
  },
  "fits": [
    {
      "models": [
        {
          "model_plot": "https://www.sasbdb.org/media/pdb_file/images/SASDA49_fit1_model1_img.png",
          "software": "DAMMIF",
          "pdb_link": [],
          "model_title": null,
          "type_of_model": "dummy",
          "software_version": "r5577",
          "model_data": "https://www.sasbdb.org/media/pdb_file/SASDA49_fit1_model1.pdb",
          "model_mw": 167.0,
          "bead_radius": 4.6,
          "log": "https://www.sasbdb.org/media/log_files/H2O-d_7.log",
          "symmetry": "",
          "comment": "MW is larger than expected and indicates that some oligomers may be present in solution.",
          "user": 4
        }
      ],
      "fit_unit": "1/A",
      "fit_plot": "https://www.sasbdb.org/media/fitting_files/scattering_plots/SASDA49_fit1_fit_img.png",
      "software": null,
      "chi_square_value": 4.874,
      "p_value": 0.026817,
      "fit_residual_plot": "SASDA49_fit1_fitresiduals_img.png",
      "fit_data": "https://www.sasbdb.org/media/fitting_files/SASDA49_fit1.fir",
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      "software_version": null,
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    },
    {
      "models": [
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          "model_plot": "https://www.sasbdb.org/media/pdb_file/images/SASDA49_fit2_model1_img.png",
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          "pdb_link": [],
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          "type_of_model": "atomic",
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          "model_data": "https://www.sasbdb.org/media/pdb_file/SASDA49_fit2_model1.pdb",
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          "bead_radius": null,
          "log": "https://www.sasbdb.org/media/log_files/B53smx25.log",
          "symmetry": "P1",
          "comment": "",
          "user": 4
        },
        {
          "model_plot": "https://www.sasbdb.org/media/pdb_file/images/SASDA49_fit2_model2_img.png",
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          "pdb_link": [],
          "model_title": null,
          "type_of_model": "atomic",
          "software_version": "2.7.1",
          "model_data": "https://www.sasbdb.org/media/pdb_file/SASDA49_fit2_model2.pdb",
          "model_mw": 232.0,
          "bead_radius": null,
          "log": "https://www.sasbdb.org/media/log_files/B53smx25_2S8DDPA.log",
          "symmetry": "P2",
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        }
      ],
      "fit_unit": "1/A",
      "fit_plot": "https://www.sasbdb.org/media/fitting_files/scattering_plots/SASDA49_fit2_fit_img.png",
      "software": null,
      "chi_square_value": 4.14,
      "p_value": 0.0,
      "fit_residual_plot": "SASDA49_fit2_fitresiduals_img.png",
      "fit_data": "https://www.sasbdb.org/media/fitting_files/SASDA49_fit2.fit",
      "fit_log": null,
      "software_version": null,
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    }
  ],
  "estimated_volume_method": null,
  "pddf_software": "ATSAS GNOM",
  "pddf_software_version": null,
  "i0_calibration_standard": null,
  "description": null,
  "experiment_description": null,
  "tags": [],
  "intensity_unit": null,
  "experimental_mw": 166.0,
  "experimental_mw_error": null,
  "guinier_i0_mw": null,
  "guinier_i0_mw_error": null,
  "porod_mw": 309.0,
  "porod_mw_error": null,
  "pddf_i0": null,
  "pddf_i0_error": null,
  "guinier_i0": 13777.6,
  "guinier_i0_error": null,
  "pddf_rg": 6.058,
  "pddf_rg_error": null,
  "guinier_rg": 5.77,
  "guinier_rg_error": 0.35,
  "pddf_dmax": 22.0,
  "pddf_dmax_error": null,
  "porod_volume": 494.76,
  "porod_volume_error": null,
  "estimated_volume": null,
  "estimated_volume_error": null,
  "guinier_point_first": 1,
  "guinier_point_last": 47,
  "pddf_point_first": null,
  "pddf_point_last": null,
  "i0_calibration_standard_data": null,
  "intensities_log_log_plot": "SASDA49_datloglog_img.png",
  "symmetry": null,
  "last_modified": "2023-06-21T07:56:39.492710+02:00",
  "bragg_peak": []
}