{ "code": "SASDV53", "status": "Published", "type_of_curve": "Single concentration", "angular_unit": "1/A", "project": { "title": "High Density of N- and O-Glycosylation Shields and Defines the Structural Dynamics of the Intrinsically Disordered Ectodomain of Receptor-type Protein Tyrosine Phosphatase Alpha", "publication": { "title": "High Density of N- and O-Glycosylation Shields and Defines the Structural Dynamics of the Intrinsically Disordered Ectodomain of Receptor-type Protein Tyrosine Phosphatase Alpha", "author_list": "Chien Y, Wang Y, Sridharan D, Kuo C, Chien C, Uchihashi T, Kato K, Angata T, Meng T, Hsu S, Khoo K", "journal": "JACS Au", "doi": "10.1021/jacsau.3c00124", "pmid": null, "published_date": "2023 Jun 13" }, "status": "released", "submitted_date": "2024-06-24", "released_date": "2024-06-24" }, "pddf_data": null, "intensities_data": "https://www.sasbdb.org/media/intensities_files/SASDV53.dat", "intensities_log_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDV53_dat_img.png", "intensities_kratky_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDV53_kratky_img.png", "pddf_plot": null, "intensities_guinier_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDV53_guinier_img.png", "sascif_data": "https://www.sasbdb.org/media/sascif/sascif_files/SASDV53.sascif", "experiment": { "instrument": { "detector": { "type": null, "name": "Eiger X 9M", "resolution": 75.0 }, "name": "Taiwan Photon Source, NSRRC", "city": "Hsinchu", "country": "Taiwan", "beamline_name": "13A", "beam_geometry": null, "type_of_source": "X-ray synchrotron", "point_source": null, "line_collimation": null, "sample_path_length": null, "line_collimation_slitlength": null, "line_collimation_integrationwidth": null, "xray_energy": null, "beam_profile_ah": null, "beam_profile_al": null }, "sample": { "molecule": [ { "long_name": "Receptor-type tyrosine-protein phosphatase alpha", "short_name": "PTPRA", "sequence": "NNATTVAPSVGITRLINSSTAEPVKEEAKTSNPTSSLTSLSVAPTFSPNITLGPTYLTTVNSSDSDNGTTRTASTNSIGITISPNGTWLPDNQFTDARTEPWEGNSSTAATTPETFPPSDETDIGGLNDIFEAQKIQWHEILNVKSIDYKDDDDKASITLAAARLADPEEPKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALHNHYTQKSLSLSPGK", "organism": "Homo sapiens", "uniprot_code": null, "uniprot_range_first": null, "uniprot_range_last": null, "oligomerization": "dimer", "molecular_type": "protein", "uniprot_sequence": "", "mw": 75.0, "total_mw": 150.0, "number_molecules": 2, "complex_state": false, "deuteration": null, "molecule_source": "biological", "molecule_description": "" } ], "buffer": { "name": "10 mM phosphate, 137 mM NaCl, 2.7 mM KCl", "concentration_unit": null, "comment": null, "additive": null, "concentration": null, "pka": null, "ph": 7.4, "deuteration": null }, "purity_method": null, "name": "Fc-fused PTPRA ECD in PBS buffer", "ext_coefficient": null, "contrast": null, "specific_vol": null, "dry_vol": null, "absorbption": null, "deuteration": null, "mixture": null }, "contributor": [ { "affiliation": [ { "short_name": null, "address": "Taipei, Taiwan", "full_name": "Academia Sinica", "webpage": "https://www.sinica.edu.tw" } ], "contributor_name": "Yong-Sheng", "contributor_surname": "Wang", "orcid": "https://orcid.org/0000-0002-4868-4507" } ], "concentration_method": null, "concentration_unit": null, "date": "2021-08-19", "storage_temperature": 15.0, "cell_temperature": 15.0, "exposure_time": 2.0, "number_of_frames": 3, "wavelength": 0.08265, "sample_detector_distance": 9.0, "concentration_min": null, "concentration_max": 10.0, "sample_volume": null, "flow_rate": null, "s_min": 0.042, "s_max": 12.533, "total_exposure_time": null, "seccolumn": null }, "fits": [ { "models": [ { "model_plot": "https://www.sasbdb.org/media/pdb_file/images/SASDV53_fit1_model1_img.png", "software": "DAMMIF", "pdb_link": [], "model_title": null, "type_of_model": "dummy", "software_version": "dammif (r9988)", "model_data": "https://www.sasbdb.org/media/pdb_file/SASDV53_fit1_model1.pdb", "model_mw": 212.0, "bead_radius": 8.5, "log": null, "symmetry": null, "comment": null, "user": 467 } ], "fit_unit": "1/A", "fit_plot": "https://www.sasbdb.org/media/fitting_files/scattering_plots/SASDV53_fit1_fixed_fit_img.png", "software": "DAMMIF", "chi_square_value": 1.738, "p_value": 0.0003, "fit_residual_plot": "SASDV53_fit1_fitresiduals_img.png", "fit_data": "https://www.sasbdb.org/media/fitting_files/SASDV53_fit1.fir", "fit_log": null, "software_version": null, "description": "" } ], "estimated_volume_method": null, "pddf_software": "ATSAS GNOM", "pddf_software_version": "5.0", "i0_calibration_standard": null, "description": null, "experiment_description": null, "tags": [], "intensity_unit": null, 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