{
  "code": "SASDC56",
  "status": "Published",
  "type_of_curve": "Extrapolated to infinite dilution",
  "angular_unit": "1/nm",
  "project": {
    "title": "The switch that does not flip: the blue-light receptor YtvA from Bacillus subtilis adopts an elongated dimer conformation independent of the activation state as revealed by a combined AUC and SAXS study.",
    "publication": {
      "title": "The switch that does not flip: the blue-light receptor YtvA from Bacillus subtilis adopts an elongated dimer conformation independent of the activation state as revealed by a combined AUC and SAXS study.",
      "author_list": "Jurk M, Dorn M, Kikhney A, Svergun D, Gärtner W, Schmieder P",
      "journal": "J Mol Biol",
      "doi": "10.1016/j.jmb.2010.08.036",
      "pmid": "20800068",
      "published_date": "2010 Oct 15"
    },
    "status": "released",
    "submitted_date": "2017-07-03",
    "released_date": "2017-07-14"
  },
  "pddf_data": "https://www.sasbdb.org/media/p_of_R_files/SASDC56.out",
  "intensities_data": "https://www.sasbdb.org/media/intensities_files/SASDC56.dat",
  "intensities_log_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/YtvA_zerconc_30_dat_img.png",
  "intensities_kratky_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/YtvA_zerconc_30_kratky_img.png",
  "pddf_plot": "https://www.sasbdb.org/media/p_of_R_files/pofr_images/zerconc_30_man_pofr_img.png",
  "intensities_guinier_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/YtvA_zerconc_30_guinier_img.png",
  "sascif_data": "https://www.sasbdb.org/media/sascif/sascif_files/SASDC56.sascif",
  "experiment": {
    "instrument": {
      "detector": {
        "type": "Custom-built",
        "name": "Pilatus 1M-W",
        "resolution": 0.172
      },
      "name": "DORIS III, DESY",
      "city": "Hamburg",
      "country": "Germany",
      "beamline_name": "EMBL X33",
      "beam_geometry": "0.60",
      "type_of_source": "X-ray synchrotron",
      "point_source": null,
      "line_collimation": null,
      "sample_path_length": null,
      "line_collimation_slitlength": null,
      "line_collimation_integrationwidth": null,
      "xray_energy": null,
      "beam_profile_ah": null,
      "beam_profile_al": null
    },
    "sample": {
      "molecule": [
        {
          "long_name": "pfyP - Blue light photoreceptor",
          "short_name": "YtvA",
          "sequence": "GASFQSFGIPGQLEVIKKALDHVRVGVVITDPALEDNPIVYVNQGFVQMTGYETEEILGK\r\nNCRFLQGKHTDPAEVDNIRTALQNKEPVTVQIQNYKKDGTMFWNELNIDPMEIEDKTYFV\r\nGIQNDITKQKEYEKLLEDSLTEITALSTPIVPIRNGISALPLVGNLTEERFNSIVCTLTN\r\nILSTSKDDYLIIDLSGLAQVNEQTADQIFKLSHLLKLTGTELIITGIKPELAMKMNKLDA\r\nNFSSLKTYSNVKDAVKVLPIM",
          "organism": "Bacillus subtilis",
          "uniprot_code": "O34627",
          "uniprot_range_first": 2,
          "uniprot_range_last": 261,
          "oligomerization": "dimer",
          "molecular_type": "protein",
          "uniprot_sequence": "MASFQSFGIPGQLEVIKKALDHVRVGVVITDPALEDNPIVYVNQGFVQMTGYETEEILGK\nNCRFLQGKHTDPAEVDNIRTALQNKEPVTVQIQNYKKDGTMFWNELNIDPMEIEDKTYFV\nGIQNDITKQKEYEKLLEDSLTEITALSTPIVPIRNGISALPLVGNLTEERFNSIVCTLTN\nILSTSKDDYLIIDLSGLAQVNEQTADQIFKLSHLLKLTGTELIITGIKPELAMKMNKLDA\nNFSSLKTYSNVKDAVKVLPIM",
          "mw": 29.12,
          "total_mw": 58.24,
          "number_molecules": 2,
          "complex_state": false,
          "deuteration": null,
          "molecule_source": "biological",
          "molecule_description": null
        }
      ],
      "buffer": {
        "name": "PBS + 5 mM DTT",
        "concentration_unit": null,
        "comment": "10 mM phosphate buffer; 2.7 mM KCl; 137 mM NaCl; 5 mM DTT",
        "additive": null,
        "concentration": null,
        "pka": null,
        "ph": 7.4,
        "deuteration": null
      },
      "purity_method": null,
      "name": "Blue light receptor YtvA, dark/inactive state",
      "ext_coefficient": null,
      "contrast": null,
      "specific_vol": null,
      "dry_vol": null,
      "absorbption": null,
      "deuteration": null,
      "mixture": false
    },
    "contributor": [
      {
        "affiliation": [
          {
            "short_name": null,
            "address": "Berlin, Germany",
            "full_name": "Leibniz-Institut für Molekulare Pharmakologie",
            "webpage": "http://www.leibniz-fmp.de"
          }
        ],
        "contributor_name": "Marcel",
        "contributor_surname": "Jurk",
        "orcid": null
      },
      {
        "affiliation": [
          {
            "short_name": "EMBL-Hamburg",
            "address": "Notkestraße 85, Geb. 25A, 22607 Hamburg, Deutschland, Germany",
            "full_name": "European Molecular Biology Laboratory (EMBL) - Hamburg outstation",
            "webpage": "http://www.embl-hamburg.de/index.php"
          }
        ],
        "contributor_name": "Al",
        "contributor_surname": "Kikhney",
        "orcid": "https://orcid.org/0000-0003-1321-3956"
      }
    ],
    "concentration_method": null,
    "concentration_unit": null,
    "date": "2009-10-24",
    "storage_temperature": 4.0,
    "cell_temperature": 20.0,
    "exposure_time": 30.0,
    "number_of_frames": 4,
    "wavelength": 0.15,
    "sample_detector_distance": 2.7,
    "concentration_min": 1.7,
    "concentration_max": 11.0,
    "sample_volume": null,
    "flow_rate": null,
    "s_min": 0.077,
    "s_max": 6.237,
    "total_exposure_time": null,
    "seccolumn": null
  },
  "fits": [
    {
      "models": [
        {
          "model_plot": "https://www.sasbdb.org/media/pdb_file/images/SASDC56_fit1_model1_img.png",
          "software": "GASBOR",
          "pdb_link": [],
          "model_title": null,
          "type_of_model": "dummy",
          "software_version": "",
          "model_data": "https://www.sasbdb.org/media/pdb_file/SASDC56_fit1_model1.pdb",
          "model_mw": null,
          "bead_radius": 1.9,
          "log": null,
          "symmetry": "P2",
          "comment": "",
          "user": 225
        }
      ],
      "fit_unit": "1/A",
      "fit_plot": "https://www.sasbdb.org/media/fitting_files/scattering_plots/SASDC56_fit1_fit_img.png",
      "software": "GASBOR",
      "chi_square_value": 16.74,
      "p_value": 0.0,
      "fit_residual_plot": "SASDC56_fit1_fitresiduals_img.png",
      "fit_data": "https://www.sasbdb.org/media/fitting_files/SASDC56_fit1.fir",
      "fit_log": null,
      "software_version": "",
      "description": null
    },
    {
      "models": [
        {
          "model_plot": "https://www.sasbdb.org/media/pdb_file/images/SASDC56_fit2_model1_img.png",
          "software": "DAMMIF",
          "pdb_link": [],
          "model_title": null,
          "type_of_model": "dummy",
          "software_version": "",
          "model_data": "https://www.sasbdb.org/media/pdb_file/SASDC56_fit2_model1.pdb",
          "model_mw": 53.4,
          "bead_radius": 2.2,
          "log": null,
          "symmetry": "P2",
          "comment": "",
          "user": 225
        },
        {
          "model_plot": "https://www.sasbdb.org/media/pdb_file/images/SASDC56_fit2_model2_img.png",
          "software": "DAMFILT",
          "pdb_link": [],
          "model_title": null,
          "type_of_model": "dummy",
          "software_version": "",
          "model_data": "https://www.sasbdb.org/media/pdb_file/SASDC56_fit2_model2.pdb",
          "model_mw": 52.092,
          "bead_radius": 2.75,
          "log": null,
          "symmetry": "",
          "comment": "",
          "user": 225
        }
      ],
      "fit_unit": "1/A",
      "fit_plot": "https://www.sasbdb.org/media/fitting_files/scattering_plots/SASDC56_fit2_fit_img.png",
      "software": "DAMMIF",
      "chi_square_value": 17.625,
      "p_value": 0.0,
      "fit_residual_plot": "SASDC56_fit2_fitresiduals_img.png",
      "fit_data": "https://www.sasbdb.org/media/fitting_files/SASDC56_fit2.fir",
      "fit_log": null,
      "software_version": "",
      "description": null
    },
    {
      "models": [
        {
          "model_plot": "https://www.sasbdb.org/media/pdb_file/images/SASDC56_fit3_model1_img.png",
          "software": "PDB (Protein Data Bank)",
          "pdb_link": [
            {
              "pdb_code": "2mwg",
              "ext_code": "2MWG",
              "ext_type": "pdb",
              "difference_with_model": "identical"
            }
          ],
          "model_title": null,
          "type_of_model": "atomic",
          "software_version": "",
          "model_data": "https://www.sasbdb.org/media/pdb_file/SASDC56_fit3_model1.pdb",
          "model_mw": 59.13,
          "bead_radius": 1.9,
          "log": null,
          "symmetry": "",
          "comment": "",
          "user": 225
        }
      ],
      "fit_unit": "1/A",
      "fit_plot": "https://www.sasbdb.org/media/fitting_files/scattering_plots/SASDC56_fit3_fit_img.png",
      "software": "CRYSOL",
      "chi_square_value": 47.748,
      "p_value": 0.0,
      "fit_residual_plot": "SASDC56_fit3_fitresiduals_img.png",
      "fit_data": "https://www.sasbdb.org/media/fitting_files/SASDC56_fit3.fit",
      "fit_log": "https://www.sasbdb.org/media/fitting_files/log_files/2mwg-multiple-models-1000_iiXzHrw.log",
      "software_version": "",
      "description": null
    }
  ],
  "estimated_volume_method": null,
  "pddf_software": "ATSAS GNOM",
  "pddf_software_version": "4.5a",
  "i0_calibration_standard": null,
  "description": null,
  "experiment_description": null,
  "tags": [
    "X33"
  ],
  "intensity_unit": null,
  "experimental_mw": 47.0,
  "experimental_mw_error": null,
  "guinier_i0_mw": null,
  "guinier_i0_mw_error": null,
  "porod_mw": 47.0,
  "porod_mw_error": null,
  "pddf_i0": 69.98,
  "pddf_i0_error": null,
  "guinier_i0": 71.16,
  "guinier_i0_error": null,
  "pddf_rg": 3.2,
  "pddf_rg_error": null,
  "guinier_rg": 3.2,
  "guinier_rg_error": 0.1,
  "pddf_dmax": 10.1,
  "pddf_dmax_error": 1.0,
  "porod_volume": 75.0,
  "porod_volume_error": null,
  "estimated_volume": null,
  "estimated_volume_error": null,
  "guinier_point_first": 14,
  "guinier_point_last": 113,
  "pddf_point_first": null,
  "pddf_point_last": null,
  "i0_calibration_standard_data": null,
  "intensities_log_log_plot": "SASDC56_datloglog_img.png",
  "symmetry": null,
  "last_modified": "2023-05-25T11:21:52.654103+02:00",
  "bragg_peak": []
}