{ "code": "SASDVB3", "status": "Published", "type_of_curve": "Single concentration", "angular_unit": "1/A", "project": { "title": "A hidden property of the iron-sulfur protein in the mononuclear iron-bound state: species-dependent structural ordering induced by magnetic fields.", "publication": { "title": "A hidden property of the iron-sulfur protein in the mononuclear iron-bound state: species-dependent structural ordering induced by magnetic fields.", "author_list": "Arai S, Soga S, Hirai M, Kobayashi R, Masai H, Kimura K, Maeda K, Nagashima H", "journal": "FEBS J", "doi": "10.1111/febs.70377", "pmid": "41466526", "published_date": "2025 Dec 30" }, "status": "released", "submitted_date": "2024-06-06", "released_date": "2026-01-02" }, "pddf_data": "https://www.sasbdb.org/media/p_of_R_files/SASDVB3.out", "intensities_data": "https://www.sasbdb.org/media/intensities_files/SASDVB3.dat", "intensities_log_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDVB3_dat_img.png", "intensities_kratky_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDVB3_kratky_img.png", "pddf_plot": "https://www.sasbdb.org/media/p_of_R_files/pofr_images/SASDVB3_pofr_img.png", "intensities_guinier_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDVB3_guinier_img.png", "sascif_data": "https://www.sasbdb.org/media/sascif/sascif_files/SASDVB3.sascif", "experiment": { "instrument": { "detector": { "type": null, "name": "Pilatus3 2M", "resolution": 0.172 }, "name": "Photon Factory (PF), High Energy Accelerator Research Organization (KEK)", "city": "Tsukuba", "country": "Japan", "beamline_name": "BL-10C", "beam_geometry": null, "type_of_source": "X-ray synchrotron", "point_source": null, "line_collimation": null, "sample_path_length": null, "line_collimation_slitlength": null, "line_collimation_integrationwidth": null, "xray_energy": null, "beam_profile_ah": null, "beam_profile_al": null }, "sample": { "molecule": [ { "long_name": "Pigeon iron-sulfur cluster assembly 1 homolog, mitochondrial", "short_name": "clISCA1", "sequence": "GPGGGGSASSASSVVRATVRAVSKRKIQATRAALTLTPSAVQKIKELLKDKPEHVGVKVGVRTRGCNGLSYTLEYTKSKGDSDEEVVQDGVRVFIEKKAQLTLLGTEMDYVEDKLSSEFVFNNPNIKGTCGCGESFNI", "organism": "Columba livia", "uniprot_code": "P0DN75", "uniprot_range_first": 2, "uniprot_range_last": 132, "oligomerization": "unknown", "molecular_type": "protein", "uniprot_sequence": "MASSASSVVRATVRAVSKRKIQATRAALTLTPSAVQKIKELLKDKPEHVGVKVGVRTRGC\nNGLSYTLEYTKSKGDSDEEVVQDGVRVFIEKKAQLTLLGTEMDYVEDKLSSEFVFNNPNI\nKGTCGCGESFNI", "mw": 14.71, "total_mw": 14.71, "number_molecules": 0, "complex_state": false, "deuteration": null, "molecule_source": "biological", "molecule_description": "The clISCA1 protein forms oligomers of various sizes." } ], "buffer": { "name": "20 mM Tris-HCl, 0.15 M NaCl, 10 mM 3-mercapto-1,2-propanediol", "concentration_unit": null, "comment": null, "additive": null, "concentration": null, "pka": null, "ph": 8.0, "deuteration": null }, "purity_method": null, "name": "Mononuclear iron bound form of pigeon ISCA1 under geomagnetic condition", "ext_coefficient": null, "contrast": null, "specific_vol": null, "dry_vol": null, "absorbption": null, "deuteration": null, "mixture": null }, "contributor": [ { "affiliation": [ { "short_name": null, "address": null, "full_name": "National Institutes for Quantum and Radiological Science and Technology ", "webpage": null } ], "contributor_name": "Shigeki", "contributor_surname": "Arai", "orcid": "https://orcid.org/0000-0002-4819-4305" } ], "concentration_method": null, "concentration_unit": null, "date": "2021-06-08", "storage_temperature": 4.0, "cell_temperature": 20.0, "exposure_time": 60.0, "number_of_frames": 1, "wavelength": 0.155, "sample_detector_distance": 2.993, "concentration_min": null, "concentration_max": 7.0, "sample_volume": null, "flow_rate": null, "s_min": 0.191, "s_max": 1.692, "total_exposure_time": null, "seccolumn": null }, "fits": [ { "models": [ { "model_plot": "https://www.sasbdb.org/media/pdb_file/images/SASDVB3_fit1_model1_img.png", "software": "DAMMIN", "pdb_link": [], "model_title": null, "type_of_model": "dummy", "software_version": null, "model_data": "https://www.sasbdb.org/media/pdb_file/SASDVB3_fit1_model1.cif", "model_mw": null, "bead_radius": null, "log": null, "symmetry": "P1", "comment": null, "user": 689 } ], "fit_unit": "1/A", "fit_plot": "https://www.sasbdb.org/media/fitting_files/scattering_plots/SASDVB3_fit1_fixed_fit_img.png", "software": "DAMMIN", "chi_square_value": 0.861, "p_value": 0.4668, "fit_residual_plot": "SASDVB3_fit1_fitresiduals_img.png", "fit_data": "https://www.sasbdb.org/media/fitting_files/SASDVB3_fit1.fir", "fit_log": null, "software_version": null, "description": "" } ], "estimated_volume_method": null, "pddf_software": "ATSAS GNOM", "pddf_software_version": "5.0", "i0_calibration_standard": null, "description": null, "experiment_description": null, "tags": [], "intensity_unit": "1/cm", "experimental_mw": 14.709, "experimental_mw_error": null, "guinier_i0_mw": null, "guinier_i0_mw_error": null, "porod_mw": 25.0, "porod_mw_error": null, "pddf_i0": 0.04134, "pddf_i0_error": null, "guinier_i0": 0.0438304, "guinier_i0_error": null, "pddf_rg": 2.51, "pddf_rg_error": null, "guinier_rg": 2.682, "guinier_rg_error": 0.639, "pddf_dmax": 7.2, "pddf_dmax_error": null, "porod_volume": 38.86, "porod_volume_error": null, "estimated_volume": null, "estimated_volume_error": null, "guinier_point_first": 1, "guinier_point_last": 127, "pddf_point_first": null, "pddf_point_last": null, "i0_calibration_standard_data": null, "intensities_log_log_plot": "SASDVB3_datloglog_img.png", "symmetry": null, "last_modified": "2026-01-02T14:57:41.056962+01:00", "bragg_peak": [] }