{ "code": "SASDVT2", "status": "Published", "type_of_curve": "Single concentration", "angular_unit": "1/nm", "project": { "title": "Plasmodium falciparum nucleoplasmin (PfNPM)", "publication": null, "status": "released", "submitted_date": "2024-06-13", "released_date": "2026-06-13" }, "pddf_data": "https://www.sasbdb.org/media/p_of_R_files/SASDVT2.out", "intensities_data": "https://www.sasbdb.org/media/intensities_files/SASDVT2.dat", "intensities_log_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDVT2_dat_img.png", "intensities_kratky_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDVT2_kratky_img.png", "pddf_plot": "https://www.sasbdb.org/media/p_of_R_files/pofr_images/SASDVT2_pofr_img.png", "intensities_guinier_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDVT2_guinier_img.png", "sascif_data": "https://www.sasbdb.org/media/sascif/sascif_files/SASDVT2.sascif", "experiment": { "instrument": { "detector": { "type": null, "name": "Pilatus3 2M", "resolution": 0.172 }, "name": "ESRF", "city": "Grenoble", "country": "France", "beamline_name": "BM29", "beam_geometry": "point", "type_of_source": "X-ray synchrotron", "point_source": null, "line_collimation": null, "sample_path_length": null, "line_collimation_slitlength": null, "line_collimation_integrationwidth": null, "xray_energy": null, "beam_profile_ah": null, "beam_profile_al": null }, "sample": { "molecule": [ { "long_name": "PfNPM A3 (1-170)", "short_name": "PfNPM A3", "sequence": "MFYGKVVKPDETVVPEVKDGYSVIHLSRACLNNPEHEGKIYVQVEDGNGCYNICCLQKNV\r\nCEDTPLDIFLMLDNDVKIKTSGSSNEVHIVGYYEVSFGQDNLDEDEDEFEDEFDNDEVRM\r\nLTKKNTLKNSLSNGISKRKKNLENNEDDETNVGRNDEDDDDEDDEDDEDELEHHHHHH", "organism": "Plasmodium falciparum 3D7", "uniprot_code": "C0H4U4", "uniprot_range_first": 1, "uniprot_range_last": 170, "oligomerization": "pentamer", "molecular_type": "protein", "uniprot_sequence": "MFYGKVVKPDETVVPEVKDGYSVIHLSRACLNNPEHEGKIYVQVEDGNGCYNICCLQKNV\nCEDTPLDIFLMLDNDVKIKTSGSSNEVHIVGYYEVSFGQDNLDEDEDEFEDEFDNDEVRM\nLTKKNTLKNSLSNGISKRKKNLENNEDDETNVGRNDEDDDDEDDEDDEDEEEDDDEEDED\nDEEDDEDDDDEEEEDEEDEDEEGEDEDDEEDEEEEEEEDEEGEDVENKKKGGDKKKNKRS\nLDNKSDGPLKKSKIDDEGQFEKDLVAFLKKNGKSKLTELGKVKKPEGLKMKLGFFIKKHS\nNVFKFDTEGQIVSLK", "mw": 20.511, "total_mw": 102.555, "number_molecules": 5, "complex_state": false, "deuteration": null, "molecule_source": "biological", "molecule_description": "" }, { "long_name": "Histone H2A type 1-B/E", "short_name": "H2A", "sequence": "MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLT\r\nAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK\r\nTESHHKAKGK", "organism": "Homo sapiens", "uniprot_code": "P04908", "uniprot_range_first": 1, "uniprot_range_last": 130, "oligomerization": "monomer", "molecular_type": "protein", "uniprot_sequence": "MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLT\nAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK\nTESHHKAKGK", "mw": 14.135, "total_mw": 14.135, "number_molecules": 1, "complex_state": false, "deuteration": null, "molecule_source": "biological", "molecule_description": "" }, { "long_name": "Histone H2B type 1-C/E/F/G/I", "short_name": "H2B", "sequence": "MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK", "organism": "Homo sapiens", "uniprot_code": "P62807", "uniprot_range_first": 1, "uniprot_range_last": 126, "oligomerization": "monomer", "molecular_type": "protein", "uniprot_sequence": "MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAM\nGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVT\nKYTSSK", "mw": 13.906, "total_mw": 13.906, "number_molecules": 1, "complex_state": false, "deuteration": null, "molecule_source": "biological", "molecule_description": "" } ], "buffer": { "name": "20 mM Tris, 150 mM NaCl, 2 mM β-mercaptoethanol", "concentration_unit": null, "comment": null, "additive": null, "concentration": null, "pka": null, "ph": 7.5, "deuteration": null }, "purity_method": null, "name": "Nucleoplasmin-like domain-containing protein PfNPM (1-170) - H2A/H2B histone oligomer complex", "ext_coefficient": null, "contrast": null, "specific_vol": null, "dry_vol": null, "absorbption": null, "deuteration": null, "mixture": null }, "contributor": [ { "affiliation": [ { "short_name": null, "address": "India", "full_name": "Institute of Life Sciences (ILS)", "webpage": "https://www.ils.res.in/" } ], "contributor_name": "Ketul", "contributor_surname": "Saharan", "orcid": "" } ], "concentration_method": null, "concentration_unit": null, "date": "2022-06-28", "storage_temperature": 4.0, "cell_temperature": 20.0, "exposure_time": 20.0, "number_of_frames": 10, "wavelength": 0.09794, "sample_detector_distance": 2.867, "concentration_min": null, "concentration_max": 1.0, "sample_volume": null, "flow_rate": null, "s_min": 0.051, "s_max": 5.217, "total_exposure_time": null, "seccolumn": null }, "fits": [ { "models": [ { "model_plot": "https://www.sasbdb.org/media/pdb_file/images/SASDVT2_fit1_model1_img.png", "software": "DAMMIF", "pdb_link": [], "model_title": null, "type_of_model": "dummy", "software_version": "DAMAVER 5.0 (r12736)", "model_data": "https://www.sasbdb.org/media/pdb_file/SASDVT2_fit1_model1.pdb", "model_mw": 151.85, "bead_radius": null, "log": null, "symmetry": null, "comment": null, "user": 757 } ], "fit_unit": "1/A", "fit_plot": "https://www.sasbdb.org/media/fitting_files/scattering_plots/SASDVT2_fit1_fixed_fit_img.png", "software": "DAMMIF", "chi_square_value": 1.118, "p_value": 0.0765, "fit_residual_plot": "SASDVT2_fit1_fitresiduals_img.png", "fit_data": "https://www.sasbdb.org/media/fitting_files/SASDVT2_fit1.fir", "fit_log": "https://www.sasbdb.org/media/fitting_files/log_files/N9.log", "software_version": null, "description": "" }, { "models": [ { "model_plot": "https://www.sasbdb.org/media/pdb_file/images/SASDVT2_fit2_model1_img.png", "software": "FoXSDock", "pdb_link": [], "model_title": null, "type_of_model": "atomic", "software_version": null, "model_data": "https://www.sasbdb.org/media/pdb_file/SASDVT2_fit2_model1.pdb", "model_mw": 124.9, "bead_radius": null, "log": null, "symmetry": null, "comment": null, "user": 757 } ], "fit_unit": "1/A", "fit_plot": "https://www.sasbdb.org/media/fitting_files/scattering_plots/SASDVT2_fit2_fixed_fit_img.png", "software": "FoXSDock", "chi_square_value": 1.388005, "p_value": 0.0, "fit_residual_plot": "SASDVT2_fit2_fitresiduals_img.png", "fit_data": "https://www.sasbdb.org/media/fitting_files/SASDVT2_fit2.fit", "fit_log": null, "software_version": null, "description": "" } ], "estimated_volume_method": null, "pddf_software": "ATSAS GNOM", "pddf_software_version": "5.0", "i0_calibration_standard": null, "description": null, "experiment_description": null, "tags": [], "intensity_unit": "arbitrary", "experimental_mw": 129.0, "experimental_mw_error": null, "guinier_i0_mw": null, "guinier_i0_mw_error": null, "porod_mw": 134.73, "porod_mw_error": null, "pddf_i0": 96.69, "pddf_i0_error": null, "guinier_i0": 97.0852, "guinier_i0_error": null, "pddf_rg": 4.493, "pddf_rg_error": null, "guinier_rg": 4.46, "guinier_rg_error": 0.114, "pddf_dmax": 13.9, "pddf_dmax_error": null, "porod_volume": 229.04, "porod_volume_error": null, "estimated_volume": null, "estimated_volume_error": null, "guinier_point_first": 2, "guinier_point_last": 31, "pddf_point_first": null, "pddf_point_last": null, "i0_calibration_standard_data": null, "intensities_log_log_plot": "SASDVT2_datloglog_img.png", "symmetry": null, "last_modified": "2026-06-12T19:50:21.739828+02:00", "bragg_peak": [] }