{ "code": "SASDYX6", "status": "Published", "type_of_curve": "SEC-SAS", "angular_unit": "1/A", "project": { "title": "Biochemical and structural characterization of a tail-spike protein with depolymerase activity identified in a marine podovirus.", "publication": { "title": "Biochemical and structural characterization of a tail-spike protein with depolymerase activity identified in a marine podovirus.", "author_list": "Sirigu S, Roret T, Mocaër PY, Larocque R, Jouanneau D, Legrand P, Baudoux AC, Czjzek M", "journal": "Acta Crystallogr D Struct Biol", "doi": "10.1107/S2059798326005425", "pmid": "42308020", "published_date": "2026 Jul 1" }, "status": "released", "submitted_date": "2026-02-14", "released_date": "2026-06-20" }, "pddf_data": "https://www.sasbdb.org/media/p_of_R_files/SASDYX6.out", "intensities_data": "https://www.sasbdb.org/media/intensities_files/SASDYX6.dat", "intensities_log_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDYX6_dat_img.png", "intensities_kratky_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDYX6_kratky_img.png", "pddf_plot": "https://www.sasbdb.org/media/p_of_R_files/pofr_images/SASDYX6_pofr_img.png", "intensities_guinier_plot": "https://www.sasbdb.org/media/intensities_files/scattering_plots/SASDYX6_guinier_img.png", "sascif_data": "https://www.sasbdb.org/media/sascif/sascif_files/SASDYX6.sascif", "experiment": { "instrument": { "detector": { "type": "CCD", "name": "AVIEX PCCD170170", "resolution": null }, "name": "SOLEIL", "city": "Saint-Aubin", "country": "France", "beamline_name": "SWING", "beam_geometry": "", "type_of_source": "X-ray synchrotron", "point_source": null, "line_collimation": null, "sample_path_length": null, "line_collimation_slitlength": null, "line_collimation_integrationwidth": null, "xray_energy": null, "beam_profile_ah": null, "beam_profile_al": null }, "sample": { "molecule": [ { "long_name": "tailspike protein depolymerase Dpo31", "short_name": "Dpo31", "sequence": "ATTVFPYAFRIFESSDLEVYLTDEDGDQ\r\nALLIEGTDYTVSGAGDEEGGEITFPVSGDPLDDGETLTILRVIDITQETDLKNQGAYY\r\nPEVVEDEFDRSRMIDQQQQEQLDRALIKTETGDRWEGQGVPAKNFAMSDPVEDTDLPT\r\nVRWTKDYVTQMAEGITGDIGAYTVVAPTSGDEKRLDEWMDDIQRPDDSLVVADGGTEA\r\nRSLSERFADSASYQDYGIAGDGTTNDTAAFAALESDRSSDAIELHGNTYLVDEIPNGN\r\nAYRDAVWSLDGEDLSISEYGGLVTGTPTTGAFEPAYTGGVNNTPTTSGRTNKHTRAIL\r\nASQNCRADFARSACVASIYSWAYGNVSGNFASRQSIAGAPQTVNIGSEEGQALGFQSG\r\nNYTTQFCRAEGSTTFNIGSDDCAASGAHSGTISSLESYAGRGHDFRGTPVFDDGVLVD\r\nITIDDAGAGYVPGSDVMYLQNRQFGNTTDAVITYTVDGTGGVSAITITDGGSGYSGIV\r\nAARIDTFGDYSLVMASARSKIEDQFCAAIASDNARVRGRESAVIASDGGVVNEDNSVV\r\nIGSVDSTSNGARSGIYTGSGCETTGAGAVVIGGVNAKASNDGAIVMGRGVDSEFARSL\r\nVFGDGGSGAAASTAGRKFQVTAAGNVTAAGTITGSTTYA", "organism": "Cobetia phage Carin1", "uniprot_code": null, "uniprot_range_first": 17, "uniprot_range_last": 665, "oligomerization": "trimer", "molecular_type": "protein", "uniprot_sequence": "", "mw": 67.5, "total_mw": 202.5, "number_molecules": 1, "complex_state": false, "deuteration": null, "molecule_source": "biological", "molecule_description": "trimeric tailspike protein that contains a depolymerase from the marine Cobetia phage Carin1, mature form, Dpo31" } ], "buffer": { "name": "Tris-HCl 50 mM pH 8, NaCl 100 mM", "concentration_unit": null, "comment": null, "additive": null, "concentration": null, "pka": null, "ph": 8.0, "deuteration": null }, "purity_method": null, "name": "trimeric depolymerase Dpo31 lacking domain D1, mature form without D4", "ext_coefficient": null, "contrast": null, "specific_vol": null, "dry_vol": null, "absorbption": null, "deuteration": null, "mixture": null }, "contributor": [ { "affiliation": [ { "short_name": null, "address": null, "full_name": "LBI2M, Sorbonne Université CNRS, UMR8227", "webpage": null } ], "contributor_name": "Mirjam", "contributor_surname": "Czjzek", "orcid": "https://orcid.org/0000-0002-7483-2841" } ], "concentration_method": null, "concentration_unit": null, "date": "2022-04-14", "storage_temperature": 4.0, "cell_temperature": 15.0, "exposure_time": 0.5, "number_of_frames": 250, "wavelength": 0.1033, "sample_detector_distance": 1.807, "concentration_min": null, "concentration_max": 26.9, "sample_volume": 40.0, "flow_rate": 0.2, "s_min": 0.037, "s_max": 5.148, "total_exposure_time": null, "seccolumn": 23 }, "fits": [ { "models": [ { "model_plot": "https://www.sasbdb.org/media/pdb_file/images/SASDYX6_fit1_model1_img.png", "software": "GASBOR", "pdb_link": [], "model_title": null, "type_of_model": "dummy", "software_version": null, "model_data": "https://www.sasbdb.org/media/pdb_file/SASDYX6_fit1_model1.pdb", "model_mw": null, "bead_radius": null, "log": "https://www.sasbdb.org/media/log_files/DD1.log", "symmetry": null, "comment": null, "user": 1029 } ], "fit_unit": "1/A", "fit_plot": "https://www.sasbdb.org/media/fitting_files/scattering_plots/SASDYX6_fit1_fixed_fit_img.png", "software": "GASBOR", "chi_square_value": 301.3696, "p_value": 0.0, "fit_residual_plot": "SASDYX6_fit1_fitresiduals_img.png", "fit_data": "https://www.sasbdb.org/media/fitting_files/SASDYX6_fit1.fir", "fit_log": "https://www.sasbdb.org/media/fitting_files/log_files/DD1.log", "software_version": null, "description": "" } ], "estimated_volume_method": null, "pddf_software": "ATSAS GNOM", "pddf_software_version": "4.5a", "i0_calibration_standard": null, "description": null, "experiment_description": null, "tags": [], "intensity_unit": "arbitrary", "experimental_mw": 174.6, "experimental_mw_error": null, "guinier_i0_mw": 157.7, "guinier_i0_mw_error": null, "porod_mw": 171.0, "porod_mw_error": null, "pddf_i0": 0.4589, "pddf_i0_error": null, "guinier_i0": 0.486523, "guinier_i0_error": null, "pddf_rg": 5.38, "pddf_rg_error": 0.05, "guinier_rg": 5.598, "guinier_rg_error": 0.069, "pddf_dmax": 19.0, "pddf_dmax_error": 0.3, "porod_volume": 207.27, "porod_volume_error": null, "estimated_volume": null, "estimated_volume_error": null, "guinier_point_first": 20, "guinier_point_last": 36, "pddf_point_first": null, "pddf_point_last": null, "i0_calibration_standard_data": null, "intensities_log_log_plot": "SASDYX6_datloglog_img.png", "symmetry": null, "last_modified": "2026-06-20T16:07:22.371129+02:00", "bragg_peak": [] }