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10ch

[011SE] Two turn tensegrity triangle with 0,1 and 1 bp sticky ends

Method: X-RAY DIFFRACTION D_max: 81.4 Å Quality: EXCELLENT

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	10ch
deposition_date	2026-01-12
last_revision	2026-03-25
title	[011SE] Two turn tensegrity triangle with 0,1 and 1 bp sticky ends
keywords	Tensegrity triangle, DNA; DNA
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	26.50 Å
rg_electron	26.12 Å
i0	67074200.00
molecular_weight	38673.0 kDa
excluded_volume	37403 Å³
envelope_volume	62966 Å³
shell_volume	21539 Å³
envelope_diameter	86.0 Å
shell_rg	31.11 Å
envelope_rg	25.66 Å
shape_rg	26.07 Å
total_rg	26.58 Å
total_atoms	2565
n_residues	126
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	81.4 Å
rg_real	26.41 Å
rg_real_error	0.63 Å
i0_real	6.7070e+07
i0_real_error	9.8200e+05
rg_reciprocal	26.44 Å
i0_reciprocal	67080000.0000
total_estimate	0.9174
solution_quality	EXCELLENT a EXCELLENT solution
n_peaks	2
r_peak_primary	31.2 Å
skewness	0.120
kurtosis	-0.649
angular_range	— – 0.3000 Å⁻¹
current_alpha	0.0000
highest_alpha	1491000.0000
n_real_points	61
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.980; Stabil: 0.999; Sysdev: 1.000; Positv: 1.000; Valcen: 0.998; Smooth: 0.987

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4. Crystallography & Experiment

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5. Entities & Polymer Info (7)

Entity 1 polymer

description	;DNA (5'-D(CPGPAPTPGPCPCPTPGPAPTPCPGPGPAPCPAPTPAPAP*A)-3') ;
formula_weight	6456.2 kDa
src_method	syn
entity_count	1

Polymer

type	polydeoxyribonucleotide
strand_id	A
atom_count	2565

CGATGCCTGATCGGACATAAA

Entity 2 polymer

description	;DNA (5'-D(TPAPGPTPCPGPTPGPGPCPAPTPCPG)-3') ;
formula_weight	4311.8 kDa
src_method	syn
entity_count	1

Polymer

type	polydeoxyribonucleotide
strand_id	E

TAGTCGTGGCATCG

Entity 3 polymer

description	;DNA (5'-D(TPTPTPAPTPGPTPGPGPTPCPGPCPT)-3') ;
formula_weight	4292.8 kDa
src_method	syn
entity_count	1

Polymer

type	polydeoxyribonucleotide
strand_id	D

TTTATGTGGTCGCT

Entity 4 polymer

description	;DNA (5'-D(GPAPGPCPGPAPCPCPTPGPTPAPCPGPGPAPCPAPTPCP*A)-3') ;
formula_weight	6457.2 kDa
src_method	syn
entity_count	1

Polymer

type	polydeoxyribonucleotide
strand_id	B

GAGCGACCTGTACGGACATCA

Entity 5 polymer

description	;DNA (5'-D(PCPTPGPAPTPGPTPGPGPTPAPGPGPT)-3') ;
formula_weight	4366.8 kDa
src_method	syn
entity_count	1

Polymer

type	polydeoxyribonucleotide
strand_id	F

CTGATGTGGTAGGT

Entity 6 polymer

description	;DNA (5'-D(APAPCPCPTPAPCPCPTPGPGPCPAPGPGPAPCPGPAPCP*T)-3') ;
formula_weight	6417.2 kDa
src_method	syn
entity_count	1

Polymer

type	polydeoxyribonucleotide
strand_id	C

AACCTACCTGGCAGGACGACT

Entity 7 polymer

description	;DNA (5'-D(APCPAPCPCPGPAPTPCPAPCPCPTPGPCPCPAPCPCPGP*T)-3') ;
formula_weight	6313.1 kDa
src_method	syn
entity_count	1

Polymer

type	polydeoxyribonucleotide
strand_id	M

ACACCGATCACCTGCCACCGT

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6. Citations (1)

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length_a	67.618 Å
length_b	68.133 Å
length_c	69.809 Å
angle_alpha	96.73 °
angle_beta	98.46 °
angle_gamma	99.85 °
z_pdb	1

space_group	P 1
int_tables_number	1
crystal_system	triclinic

resolution	4.450 Å
resolution_low	40.930 Å
r_factor	0.2169
r_work	0.2160
r_free	0.2267

fit	/app/data/saxs_computation/0c/10ch/10ch.fit
pddf	/app/data/pr_computation/0c/10ch/10ch.pr.out
profile	/app/data/saxs_computation/0c/10ch/10ch.dat

[011SE] Two turn tensegrity triangle with 0,1 and 1 bp sticky ends

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction

5. Entities & Polymer Info (7)

Entity 1 polymer

Polymer

Entity 2 polymer

Polymer

Entity 3 polymer

Polymer

Entity 4 polymer

Polymer

Entity 5 polymer

Polymer

Entity 6 polymer

Polymer

Entity 7 polymer

Polymer

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)