[17,17,7-17N_332] Isosceles tensegrity triangle with 17, 17 and 7 bp between junctions and 3, 3, and 2 turns of DNA per edge

entry_id	10hd
deposition_date	2026-01-19
last_revision	2026-03-25
title	[17,17,7-17N_332] Isosceles tensegrity triangle with 17, 17 and 7 bp between junctions and 3, 3, and 2 turns of DNA per edge
keywords	Tensegrity triangle, DNA; DNA
method	X-RAY DIFFRACTION

rg_guinier	34.10 Å
rg_electron	34.12 Å
i0	111778000.00
molecular_weight	51006.0 kDa
excluded_volume	49338 ų
envelope_volume	94233 ų
shell_volume	24618 ų
envelope_diameter	110.4 Å
shell_rg	37.86 Å
envelope_rg	33.43 Å
shape_rg	34.10 Å
total_rg	34.35 Å
total_atoms	3382
n_residues	166
n_harmonics	20
q_range	— – 0.5000 Å−1
n_points	101
shell_type	directional
solvent_density	0.3340 e/ų
contrast_shell	0.0300 e/ų
crysol_version	4.1.3

dmax	106.9 Å
rg_real	34.21 Å
rg_real_error	0.95 Å
i0_real	1.1180e+08
i0_real_error	1.9530e+06
rg_reciprocal	34.14 Å
i0_reciprocal	111800000.0000
total_estimate	0.8642
solution_quality	GOOD a GOOD solution
n_peaks	1
r_peak_primary	34.9 Å
skewness	0.296
kurtosis	-0.666
angular_range	— – 0.2300 Å−1
current_alpha	0.0000
highest_alpha	2859000.0000
n_real_points	47
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.977; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.915; Smooth: 0.384

Unit Cell

length_a	68.035 Å
length_b	86.395 Å
length_c	101.431 Å
angle_alpha	106.32 °
angle_beta	101.56 °
angle_gamma	111.48 °
z_pdb	1

Symmetry

space_group	P 1
int_tables_number	1
crystal_system	triclinic

Refinement

resolution	5.260 Å
resolution_low	45.780 Å
r_factor	0.1511
r_work	0.1495
r_free	0.1918

Diffraction

temperature

100.0 K

Files (7)

• pr_distribution /app/data/pr_computation/0h/10hd/pr_distribution.json
• pr_output /app/data/pr_computation/0h/10hd/10hd.pr.out
• pr_plot /app/data/visualization/pr_computation/0h/10hd/10hd_pr_distribution.png
• saxs_curve_dat /app/data/saxs_computation/0h/10hd/10hd.dat
• saxs_fit /app/data/saxs_computation/0h/10hd/10hd.fit
• saxs_log /app/data/saxs_computation/0h/10hd/10hd.log
• saxs_plot /app/data/visualization/saxs_computation/0h/10hd/10hd_saxs_profile.png

Curves (3)

fit	/app/data/saxs_computation/0h/10hd/10hd.fit
pddf	/app/data/pr_computation/0h/10hd/10hd.pr.out
profile	/app/data/saxs_computation/0h/10hd/10hd.dat