10hs

[17,17,7-7N_234] Isosceles tensegrity triangle with 17, 17 and 7 base pairs between junctions and two, three, and four turn edges

Method: X-RAY DIFFRACTION Dmax: 137.6 Å Quality: GOOD

1. Protein Identity and Related Structures Protein Identity & Related Structures

No usable UniProt protein identity is available for this entry.

七张关系表仍保留该条目的 assembly 与组成信息,但缺少统一蛋白身份时,不能可靠建立跨 PDB 的同蛋白Chain接。

Assembly Composition of the Current Entry

Assembly Oligomeric State 实体与Construct证据 Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Nucleic acid only No protein 蛋白 0 / DNA 7 / RNA 0 / 其他Polymer 0 PDB declaration: heptameric Entity 1:DNA (31-MER) × 1 Entity 2:;DNA (5'-D(*TP*GP*TP*GP*AP*TP*GP*TP*GP*GP*CP*TP*GP*C)-3') ; × 1 Entity 3:;DNA (5'-D(*GP*AP*GP*CP*AP*GP*CP*CP*TP*GP*TP*AP*CP*GP*GP*AP*CP*AP*TP*CP*A)-3') ; × 1 Entity 4:DNA (41-MER) × 1 Entity 5:;DNA (5'-D(*TP*CP*TP*GP*AP*TP*GP*TP*GP*GP*TP*AP*GP*AP*TP*GP*CP*TP*C)-3') ; × 1 Entity 6:;DNA (5'-D(*TP*TP*CP*GP*TP*GP*TP*AP*CP*AP*TP*AP*GP*TP*GP*GP*TP*CP*GP*C)-3') ; × 1 Entity 7:DNA (42-MER) × 1 缺少 UniProt 身份时不显示参考序列区间 Not recorded No recorded non-water small molecule X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;pH 8;293 K;100 mM MOPS, 1.25 M magnesium sulfate Resolution 6.83 Å R-free 0.144

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 10hs

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 10hs
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2. Structure Basics 2. Structure Basics

Entry ID entry_id10hs
Deposition date deposition_date2026-01-20
最后修订 last_revision2026-03-25
Structure title title[17,17,7-7N_234] Isosceles tensegrity triangle with 17, 17 and 7 base pairs between junctions and two, three, and four turn edges
Keywords keywordsTensegrity triangle, DNA; DNA
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier37.79
Radius of gyration Rg (electron density) rg_electron38.19
Forward intensity I(0) i0142246000.00
Molecular weight molecular_weight57825.0 kDa
Excluded volume excluded_volume55917 ų
Envelope volume envelope_volume112100 ų
Hydration-shell volume shell_volume26805 ų
Envelope diameter envelope_diameter141.8
Shell Rg shell_rg39.53
Envelope Rg envelope_rg38.00
Shape Rg shape_rg38.17
Total Rg total_rg38.27
Total atoms total_atoms3833
Residues n_residues188
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax137.6
Rg (real space) rg_real38.14
Rg uncertainty (real space) rg_real_error2.19
I(0) (real space) i0_real1.4220e+08
I(0) uncertainty (real space) i0_real_error2.6330e+06
Rg (reciprocal space) rg_reciprocal37.93
I(0) (reciprocal space) i0_reciprocal142200000.0000
Solution quality estimate total_estimate0.8469
Solution quality rating solution_quality GOOD a GOOD solution
P(r) peaks n_peaks2
Primary peak position r_peak_primary36.0
Skewness Skewness skewness0.435
Kurtosis Kurtosis kurtosis-0.401
Angular range angular_range— – 0.2100 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha4047000.0000
Real-space data points n_real_points43
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.785; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.748; Smooth: 0.904

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (7)

8. Citations (1)

9. Files and Curves (10)