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10yv

Structure of a putative GH97 from Cellulomonas fimi

Method: X-RAY DIFFRACTION D_max: 79.9 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	10yv
deposition_date	2026-02-12
last_revision	2026-05-06
title	Structure of a putative GH97 from Cellulomonas fimi
keywords	hypothetical protein, UNKNOWN FUNCTION; UNKNOWN FUNCTION
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	24.77 Å
rg_electron	23.79 Å
i0	61205700.00
molecular_weight	59396.0 kDa
excluded_volume	73020 Å³
envelope_volume	83124 Å³
shell_volume	29062 Å³
envelope_diameter	80.4 Å
shell_rg	31.35 Å
envelope_rg	23.78 Å
shape_rg	23.76 Å
total_rg	24.65 Å
total_atoms	4109
n_residues	548
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	79.9 Å
rg_real	24.72 Å
rg_real_error	0.39 Å
i0_real	6.1210e+07
i0_real_error	8.0710e+05
rg_reciprocal	24.73 Å
i0_reciprocal	61210000.0000
total_estimate	0.8900
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	29.2 Å
skewness	0.345
kurtosis	-0.302
angular_range	— – 0.3200 Å⁻¹
current_alpha	0.0000
highest_alpha	12030000.0000
n_real_points	64
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.862; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.997; Smooth: 0.984

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4. Crystallography & Experiment

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5. Entities & Polymer Info (6)

Entity 1 polymer

description	Putative GH97 from Cellulomonas fimi
formula_weight	28919.0 kDa
src_method	man
entity_count	2

Polymer

type	polypeptide(L)
strand_id	A,B
atom_count	4790

AVSAITAMWLWDNSVDPSVDGRGTGYAFATPEQLVAFAAEHGLQTVHVSAPWASDEGPVATWMTDALVALDAAGVDAGVLGGDAPWLANPALAVQWMTAATHDRPVTHVQLDVEPWTLPSWQADTHAASLQWLHMLDVVRAAMPAGVDLSVDAPWWLTTVANPEGPGTLFDAVLARVDRIGIVTFIDHAQGETGILAKSAAGVAAAEAAATPYTIGLETDAPAVAGGAEFTFYDDGAAVLEAEAQEVAVALAGHAWFRGIAVQHYEAWRDLIDRG

Source

organism	Cellulomonas fimi
ncbi_taxonomy_id	1708
host_organism	Escherichia coli

Entity 2 non-polymer

description	CADMIUM ION
formula_weight	112.4 kDa
src_method	syn
entity_count	10

Entity 3 non-polymer

description	CALCIUM ION
formula_weight	40.1 kDa
src_method	syn
entity_count	8

Entity 4 non-polymer

description	POTASSIUM ION
formula_weight	39.1 kDa
src_method	syn
entity_count	2

Entity 5 non-polymer

description	CHLORIDE ION
formula_weight	35.5 kDa
src_method	syn
entity_count	5

Entity 6 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	676

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6. Citations (1)

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length_a	71.424 Å
length_b	74.434 Å
length_c	132.431 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	8

space_group	P 21 21 21
int_tables_number	19
crystal_system	orthorhombic

resolution	2.150 Å
resolution_low	37.970 Å
r_factor	0.2086
r_work	0.2071
r_free	0.2359

fit	/app/data/saxs_computation/0y/10yv/10yv.fit
pddf	/app/data/pr_computation/0y/10yv/10yv.pr.out
profile	/app/data/saxs_computation/0y/10yv/10yv.dat