gRNAde designed RNA molecule

Method: ELECTRON MICROSCOPY D_max: 72.6 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	10zt
deposition_date	2026-02-13
title	gRNAde designed RNA molecule
keywords	pseudoknot, kissing multiloops, RNA; RNA
method	ELECTRON MICROSCOPY

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	22.49 Å
rg_electron	22.07 Å
i0	48532700.00
molecular_weight	31200.0 kDa
excluded_volume	29039 Å³
envelope_volume	46115 Å³
shell_volume	18563 Å³
envelope_diameter	76.7 Å
shell_rg	27.01 Å
envelope_rg	21.60 Å
shape_rg	22.02 Å
total_rg	22.55 Å
total_atoms	2058
n_residues	96
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	72.6 Å
rg_real	22.42 Å
rg_real_error	0.61 Å
i0_real	4.8530e+07
i0_real_error	6.3770e+05
rg_reciprocal	22.44 Å
i0_reciprocal	48530000.0000
total_estimate	0.8254
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	28.6 Å
skewness	0.201
kurtosis	-0.449
angular_range	— – 0.3550 Å⁻¹
current_alpha	0.0000
highest_alpha	2511000.0000
n_real_points	67
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.910; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.998; Smooth: 0.000

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4. Crystallography & Experiment

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5. Entities & Polymer Info (1)

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6. Citations (1)

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length_a	1.000 Å
length_b	1.000 Å
length_c	1.000 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	—

space_group	P 1
int_tables_number	1
crystal_system	—

resolution	2.900 Å
resolution_low	— Å
r_factor	—
r_work	—
r_free	—

resolution	2.90 Å
resolution_method	—
num_particles	479673

description	RNA (519-MER)
formula_weight	168282.0 kDa
src_method	man
entity_count	1

gRNAde designed RNA molecule

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

EM 3D

5. Entities & Polymer Info (1)

Entity 1 polymer

Polymer

Source

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)

organism	synthetic construct
ncbi_taxonomy_id	32630
host_organism	Escherichia phage T7

fit	/app/data/saxs_computation/0z/10zt/10zt.fit
pddf	/app/data/pr_computation/0z/10zt/10zt.pr.out
profile	/app/data/saxs_computation/0z/10zt/10zt.dat

type	polyribonucleotide
strand_id	A
atom_count	2058