11bk
Crystal structure of radiolytically cleaved trabectedin-DNA complex
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 11bk |
| deposition_date | 2026-02-16 |
| title | Crystal structure of radiolytically cleaved trabectedin-DNA complex |
| keywords | DNA, Anticancer, Drug, TC-NER, XPG inhibitor, DNA repair; DNA |
| method | X-RAY DIFFRACTION |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 13.74 Å |
| rg_electron | 13.15 Å |
| i0 | 4412390.00 |
| molecular_weight | 8459.0 kDa |
| excluded_volume | 7084 ų |
| envelope_volume | 11253 ų |
| shell_volume | 7944 ų |
| envelope_diameter | 44.6 Å |
| shell_rg | 17.43 Å |
| envelope_rg | 13.22 Å |
| shape_rg | 13.03 Å |
| total_rg | 13.87 Å |
| total_atoms | 594 |
| n_residues | 24 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 45.6 Å |
| rg_real | 13.77 Å |
| rg_real_error | 0.31 Å |
| i0_real | 4.4120e+06 |
| i0_real_error | 4.3670e+04 |
| rg_reciprocal | 13.77 Å |
| i0_reciprocal | 4412000.0000 |
| total_estimate | 0.8851 |
| solution_quality | GOOD a GOOD solution |
| n_peaks | 2 |
| r_peak_primary | 15.0 Å |
| skewness | 0.372 |
| kurtosis | -0.393 |
| angular_range | — – 0.5000 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 316200.0000 |
| n_real_points | 80 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.861; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.926; Smooth: 0.993 |