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11or

Omi32 Fab in complex with LC-Kappa VHH

Method: ELECTRON MICROSCOPY D_max: 85.4 Å Quality: EXCELLENT

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	11or
deposition_date	2026-03-06
title	Omi32 Fab in complex with LC-Kappa VHH
keywords	antibody, fab, evolved, broadly neutralizing, IMMUNE SYSTEM; IMMUNE SYSTEM
method	ELECTRON MICROSCOPY

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	27.33 Å
rg_electron	26.35 Å
i0	59163900.00
molecular_weight	58528.0 kDa
excluded_volume	72588 Å³
envelope_volume	90777 Å³
shell_volume	28748 Å³
envelope_diameter	90.4 Å
shell_rg	33.65 Å
envelope_rg	26.05 Å
shape_rg	26.34 Å
total_rg	27.17 Å
total_atoms	4125
n_residues	545
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	85.4 Å
rg_real	27.22 Å
rg_real_error	0.58 Å
i0_real	5.9160e+07
i0_real_error	7.9640e+05
rg_reciprocal	27.26 Å
i0_reciprocal	59170000.0000
total_estimate	0.9096
solution_quality	EXCELLENT a EXCELLENT solution
n_peaks	2
r_peak_primary	36.8 Å
skewness	0.153
kurtosis	-0.576
angular_range	— – 0.2900 Å⁻¹
current_alpha	0.0000
highest_alpha	12060000.0000
n_real_points	59
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.955; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 1.000; Smooth: 0.955

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4. Crystallography & Experiment

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5. Entities & Polymer Info (3)

Entity 1 polymer

description	Omi32 heavy chain
formula_weight	23277.0 kDa
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	H
atom_count	4128

EVQLVESGGGVVQPGRSLRLSCAASGFTFSNYGMHWVRQAPGKGLEWVAVYWYDGGNKFYADSVKGRFTISRDNSKNTLYLQMNSLRVEDTAVYYCARDTAPPDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPK

Source

organism	Homo sapiens
ncbi_taxonomy_id	9606
host_organism	Homo sapiens

Entity 2 polymer

description	Omi32 light chain
formula_weight	22902.4 kDa
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	L

MTQSPGTLSLSPGERATLSCRASQSISSSFLAWYQQKPGQAPRLLIYGASSRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQYGTSPRLTFGGGTKVDIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRG

Source

organism	Homo sapiens
ncbi_taxonomy_id	9606
host_organism	Homo sapiens

Entity 3 polymer

description	LC-Kappa VHH
formula_weight	13162.4 kDa
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	K

EVQLQESGGGLVQPGGSLRLSCAASGRTISRYAMSWFRQAPGKEREFVATARRSGDGAFYADSVQGRFTVSRDDAKNTVYLQMNSLKPEDTAVYYCAIDSDTFYSGSYDYWGQGTQVTVS

Source

organism	Lama glama
ncbi_taxonomy_id	9844
host_organism	Saccharomyces cerevisiae

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6. Citations (1)

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length_a	1.000 Å
length_b	1.000 Å
length_c	1.000 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	—

space_group	P 1
int_tables_number	1
crystal_system	—

resolution	3.200 Å
resolution_low	— Å
r_factor	—
r_work	—
r_free	—

resolution	3.20 Å
resolution_method	—
num_particles	71518

fit	/app/data/saxs_computation/1o/11or/11or.fit
pddf	/app/data/pr_computation/1o/11or/11or.pr.out
profile	/app/data/saxs_computation/1o/11or/11or.dat

Omi32 Fab in complex with LC-Kappa VHH

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

EM 3D

5. Entities & Polymer Info (3)

Entity 1 polymer

Polymer

Source

Entity 2 polymer

Polymer

Source

Entity 3 polymer

Polymer

Source

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)