A-DNA DECAMER D(GCGGGCCCGC)-ORTHORHOMBIC CRYSTAL FORM

Method: X-RAY DIFFRACTION D_max: 43.9 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	137d
deposition_date	1993-09-15
title	A-DNA DECAMER D(GCGGGCCCGC)-ORTHORHOMBIC CRYSTAL FORM
keywords	A-DNA, DOUBLE HELIX, DNA; DNA
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	12.21 Å
rg_electron	11.61 Å
i0	2018580.00
molecular_weight	6076.0 kDa
excluded_volume	5818 Å³
envelope_volume	7818 Å³
shell_volume	6356 Å³
envelope_diameter	40.6 Å
shell_rg	16.10 Å
envelope_rg	11.45 Å
shape_rg	11.48 Å
total_rg	12.53 Å
total_atoms	404
n_residues	20
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	43.9 Å
rg_real	12.18 Å
rg_real_error	0.49 Å
i0_real	2.0190e+06
i0_real_error	2.5590e+04
rg_reciprocal	12.18 Å
i0_reciprocal	2019000.0000
total_estimate	0.8258
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	16.7 Å
skewness	0.226
kurtosis	-0.200
angular_range	— – 0.5000 Å⁻¹
current_alpha	0.0000
highest_alpha	56210.0000
n_real_points	80
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.601; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.940; Smooth: 0.987

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4. Crystallography & Experiment

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5. Entities & Polymer Info (2)

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6. Citations (1)

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length_a	24.900 Å
length_b	44.840 Å
length_c	47.970 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	8

space_group	P 21 21 21
int_tables_number	19
crystal_system	—

resolution	1.700 Å
resolution_low	8.000 Å
r_factor	0.1850
r_work	0.1850
r_free	—

description	;DNA (5'-D(GPCPGPGPGPCPCPCPGPC)-3') ;
formula_weight	3047.0 kDa
src_method	syn
entity_count	2

type	polydeoxyribonucleotide
strand_id	A,B
atom_count	505

A-DNA DECAMER D(GCGGGCCCGC)-ORTHORHOMBIC CRYSTAL FORM

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction

5. Entities & Polymer Info (2)

Entity 1 polymer

Polymer

Entity 2 water

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	101

fit	/app/data/saxs_computation/37/137d/137d.fit
pddf	/app/data/pr_computation/37/137d/137d.pr.out
profile	/app/data/saxs_computation/37/137d/137d.dat