A-DNA DECAMER D(GCGGGCCCGC)-HEXAGONAL CRYSTAL FORM

Method: X-RAY DIFFRACTION D_max: 36.8 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	138d
deposition_date	1993-09-15
title	A-DNA DECAMER D(GCGGGCCCGC)-HEXAGONAL CRYSTAL FORM
keywords	A-DNA, DOUBLE HELIX, DNA; DNA
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	11.41 Å
rg_electron	10.95 Å
i0	560676.00
molecular_weight	3038.0 kDa
excluded_volume	2909 Å³
envelope_volume	4229 Å³
shell_volume	4043 Å³
envelope_diameter	34.4 Å
shell_rg	14.26 Å
envelope_rg	10.69 Å
shape_rg	10.85 Å
total_rg	11.76 Å
total_atoms	202
n_residues	10
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	36.8 Å
rg_real	11.45 Å
rg_real_error	0.34 Å
i0_real	5.6070e+05
i0_real_error	6.0630e+03
rg_reciprocal	11.45 Å
i0_reciprocal	560700.0000
total_estimate	0.8879
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	9.8 Å
skewness	0.200
kurtosis	-0.755
angular_range	— – 0.5000 Å⁻¹
current_alpha	0.0000
highest_alpha	13430.0000
n_real_points	80
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.945; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.730; Smooth: 0.974

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4. Crystallography & Experiment

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5. Entities & Polymer Info (2)

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6. Citations (1)

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length_a	39.110 Å
length_b	39.110 Å
length_c	79.230 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	120.00 °
z_pdb	12

space_group	P 61 2 2
int_tables_number	178
crystal_system	—

resolution	1.800 Å
resolution_low	8.000 Å
r_factor	0.1830
r_work	0.1830
r_free	—

description	;DNA (5'-D(GPCPGPGPGPCPCPCPGPC)-3') ;
formula_weight	3047.0 kDa
src_method	syn
entity_count	1

type	polydeoxyribonucleotide
strand_id	A
atom_count	240

A-DNA DECAMER D(GCGGGCCCGC)-HEXAGONAL CRYSTAL FORM

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction

5. Entities & Polymer Info (2)

Entity 1 polymer

Polymer

Entity 2 water

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	38

fit	/app/data/saxs_computation/38/138d/138d.fit
pddf	/app/data/pr_computation/38/138d/138d.pr.out
profile	/app/data/saxs_computation/38/138d/138d.dat