148d
THREE-DIMENSIONAL SOLUTION STRUCTURE OF THE THROMBIN BINDING DNA APTAMER D(GGTTGGTGTGGTTGG)
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 148d |
| deposition_date | 1993-11-15 |
| title | THREE-DIMENSIONAL SOLUTION STRUCTURE OF THE THROMBIN BINDING DNA APTAMER D(GGTTGGTGTGGTTGG) |
| keywords | DNA; DNA |
| method | SOLUTION NMR |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 9.21 Å |
| rg_electron | 9.13 Å |
| i0 | 129416000.00 |
| molecular_weight | 56870.0 kDa |
| excluded_volume | 54967 ų |
| envelope_volume | 7351 ų |
| shell_volume | 6766 ų |
| envelope_diameter | 30.5 Å |
| shell_rg | 14.65 Å |
| envelope_rg | 9.91 Å |
| shape_rg | 8.93 Å |
| total_rg | 9.58 Å |
| total_atoms | 5856 |
| n_residues | 180 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 27.7 Å |
| rg_real | 9.15 Å |
| rg_real_error | 0.21 Å |
| i0_real | 1.2940e+08 |
| i0_real_error | 1.2010e+06 |
| rg_reciprocal | 9.15 Å |
| i0_reciprocal | 129400000.0000 |
| total_estimate | 0.7082 |
| solution_quality | REASONABLE a REASONABLE solution |
| n_peaks | 2 |
| r_peak_primary | 10.9 Å |
| skewness | 0.075 |
| kurtosis | -0.571 |
| angular_range | — – 0.5000 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 43710.0000 |
| n_real_points | 80 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.961; Stabil: 0.997; Sysdev: 0.169; Positv: 1.000; Valcen: 0.994; Smooth: 0.828 |