1a4i

HUMAN TETRAHYDROFOLATE DEHYDROGENASE / CYCLOHYDROLASE

Method: X-RAY DIFFRACTION Dmax: 79.5 Å Quality: GOOD

1. Protein Identity and Related Structures Protein Identity & Related Structures

METHYLENETETRAHYDROFOLATE DEHYDROGENASE / METHENYLTETRAHYDROFOLATE CYCLOHYDROLASE

Homo sapiens

UniProt P11586

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein homooligomer Homooligomer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain A; UniProt 1–300 Chain B; UniProt 1–300 Not recorded NDP NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE × 2 X-RAY DIFFRACTION X-ray crystallization conditions:pH 5.5;pH 5.5 Resolution 1.50 Å R-free 0.235

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

11 other PDB entries and 15 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name C1TC_HUMAN
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 2–301; UniProt 1–300 Author chain B; PDBConstruct 2–301; UniProt 1–300

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 1a4i

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 1a4i
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2. Structure Basics 2. Structure Basics

Entry ID entry_id1a4i
Deposition date deposition_date1998-01-30
Structure title titleHUMAN TETRAHYDROFOLATE DEHYDROGENASE / CYCLOHYDROLASE
Keywords keywordsTHF, BIFUNCTIONAL, DEHYDROGENASE, CYCLOHYDROLASE, FOLATE, OXIDOREDUCTASE; OXIDOREDUCTASE
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier26.28
Radius of gyration Rg (electron density) rg_electron25.46
Forward intensity I(0) i069862500.00
Molecular weight molecular_weight64180.0 kDa
Excluded volume excluded_volume80099 ų
Envelope volume envelope_volume97180 ų
Hydration-shell volume shell_volume31193 ų
Envelope diameter envelope_diameter83.1
Shell Rg shell_rg33.39
Envelope Rg envelope_rg25.68
Shape Rg shape_rg25.49
Total Rg total_rg26.20
Total atoms total_atoms4492
Residues n_residues580
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax79.5
Rg (real space) rg_real26.17
Rg uncertainty (real space) rg_real_error0.50
I(0) (real space) i0_real6.9860e+07
I(0) uncertainty (real space) i0_real_error9.2990e+05
Rg (reciprocal space) rg_reciprocal26.21
I(0) (reciprocal space) i0_reciprocal69860000.0000
Solution quality estimate total_estimate0.8983
Solution quality rating solution_quality GOOD a GOOD solution
P(r) peaks n_peaks3
Primary peak position r_peak_primary27.8
Skewness Skewness skewness0.207
Kurtosis Kurtosis kurtosis-0.505
Angular range angular_range— – 0.3000 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha10580000.0000
Real-space data points n_real_points61
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.942; Stabil: 0.989; Sysdev: 1.000; Positv: 1.000; Valcen: 0.995; Smooth: 0.883

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (3)

7. Fold Classification (SCOP + CATH) 8 domains

SCOP 2.08 (4 domains)

Domain ID domain_idd1a4ia1
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.2 — NAD(P)-binding Rossmann-fold domains
Superfamily Superfamily superfamilyc.2.1 — NAD(P)-binding Rossmann-fold domains
Family Family familyc.2.1.7 — Aminoacid dehydrogenase-like, C-terminal domain
Domain ID domain_idd1a4ia2
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.58 — Aminoacid dehydrogenase-like, N-terminal domain
Superfamily Superfamily superfamilyc.58.1 — Aminoacid dehydrogenase-like, N-terminal domain
Family Family familyc.58.1.2 — Tetrahydrofolate dehydrogenase/cyclohydrolase
Domain ID domain_idd1a4ib1
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.2 — NAD(P)-binding Rossmann-fold domains
Superfamily Superfamily superfamilyc.2.1 — NAD(P)-binding Rossmann-fold domains
Family Family familyc.2.1.7 — Aminoacid dehydrogenase-like, C-terminal domain
Domain ID domain_idd1a4ib2
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.58 — Aminoacid dehydrogenase-like, N-terminal domain
Superfamily Superfamily superfamilyc.58.1 — Aminoacid dehydrogenase-like, N-terminal domain
Family Family familyc.58.1.2 — Tetrahydrofolate dehydrogenase/cyclohydrolase

CATH v4.4 (4 domains)

Domain ID domain_id1a4iA01
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily720 — NAD(P)-binding Rossmann-like Domain
Domain ID domain_id1a4iA02
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily10860 — Leucine Dehydrogenase, chain A, domain 1
Domain ID domain_id1a4iB01
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily720 — NAD(P)-binding Rossmann-like Domain
Domain ID domain_id1a4iB02
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily10860 — Leucine Dehydrogenase, chain A, domain 1

8. Citations (1)

9. Files and Curves (10)