FIVE-NUCLEOTIDE BULGE LOOP FROM TETRAHYMENA THERMOPHILA GROUP I INTRON

Method: SOLUTION NMR D_max: 36.7 Å Quality: REASONABLE

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	1ajl
deposition_date	1997-05-06
title	FIVE-NUCLEOTIDE BULGE LOOP FROM TETRAHYMENA THERMOPHILA GROUP I INTRON
keywords	RNA BULGE LOOP, GROUP I INTRON, RIBONUCLEIC ACID, RNA; RNA
method	SOLUTION NMR

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	11.37 Å
rg_electron	10.67 Å
i0	2080600.00
molecular_weight	6038.0 kDa
excluded_volume	5684 Å³
envelope_volume	7185 Å³
shell_volume	6352 Å³
envelope_diameter	34.9 Å
shell_rg	15.07 Å
envelope_rg	10.70 Å
shape_rg	10.53 Å
total_rg	11.60 Å
total_atoms	610
n_residues	19
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	36.7 Å
rg_real	11.32 Å
rg_real_error	0.26 Å
i0_real	2.0810e+06
i0_real_error	2.2550e+04
rg_reciprocal	11.32 Å
i0_reciprocal	2081000.0000
total_estimate	0.7480
solution_quality	REASONABLE a REASONABLE solution
n_peaks	2
r_peak_primary	14.9 Å
skewness	0.146
kurtosis	-0.400
angular_range	— – 0.5000 Å⁻¹
current_alpha	0.0000
highest_alpha	70270.0000
n_real_points	80
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.899; Stabil: 1.000; Sysdev: 0.368; Positv: 1.000; Valcen: 0.998; Smooth: 0.922

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4. Crystallography & Experiment

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5. Entities & Polymer Info (2)

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6. Citations (1)

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length_a	1.000 Å
length_b	1.000 Å
length_c	1.000 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	1

space_group	P 1
int_tables_number	1
crystal_system	—

description	;RNA (5'-R(GPGPUPAPAPUPAPAPGPCPUPC)-3') ;
formula_weight	3836.3 kDa
src_method	man
entity_count	1

type	polyribonucleotide
strand_id	A
atom_count	610

organism	Tetrahymena thermophila
ncbi_taxonomy_id	5911

FIVE-NUCLEOTIDE BULGE LOOP FROM TETRAHYMENA THERMOPHILA GROUP I INTRON

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

5. Entities & Polymer Info (2)

Entity 1 polymer

Polymer

Source

Entity 2 polymer

Polymer

Source

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)

description	;RNA (5'-R(GPAPGPUPAPCP*C)-3') ;
formula_weight	2220.4 kDa
src_method	man
entity_count	1

fit	/app/data/saxs_computation/aj/1ajl/1ajl.fit
pddf	/app/data/pr_computation/aj/1ajl/1ajl.pr.out
profile	/app/data/saxs_computation/aj/1ajl/1ajl.dat