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1avb

ARCELIN-1 FROM PHASEOLUS VULGARIS L

Method: X-RAY DIFFRACTION D_max: 85.1 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	1avb
deposition_date	1997-09-15
title	ARCELIN-1 FROM PHASEOLUS VULGARIS L
keywords	LECTIN-LIKE GLYCOPROTEIN, PLANT DEFENSE, INSECTICIDAL ACTIVITY, LECTIN; LECTIN
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	25.63 Å
rg_electron	24.46 Å
i0	47690000.00
molecular_weight	51636.0 kDa
excluded_volume	63800 Å³
envelope_volume	76075 Å³
shell_volume	26261 Å³
envelope_diameter	85.7 Å
shell_rg	31.20 Å
envelope_rg	24.61 Å
shape_rg	24.42 Å
total_rg	25.35 Å
total_atoms	3638
n_residues	452
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	85.1 Å
rg_real	25.67 Å
rg_real_error	0.53 Å
i0_real	4.7690e+07
i0_real_error	5.9380e+05
rg_reciprocal	25.66 Å
i0_reciprocal	47690000.0000
total_estimate	0.8858
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	27.5 Å
skewness	0.385
kurtosis	-0.418
angular_range	— – 0.3100 Å⁻¹
current_alpha	0.0000
highest_alpha	6134000.0000
n_real_points	63
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.849; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.976; Smooth: 0.987

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4. Crystallography & Experiment

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5. Entities & Polymer Info (5)

Entity 1 polymer

description	ARCELIN-1
formula_weight	24984.6 kDa
src_method	nat
entity_count	2

Polymer

type	polypeptide(L)
strand_id	A,B
atom_count	3868

SNDASFNVETFNKTNLILQGDATVSSEGHLLLTNVKGNEEDSMGRAFYSAPIQINDRTIDNLASFSTNFTFRINAKNIENSAYGLAFALVPVGSRPKLKGRYLGLFNTTNYDRDAHTVAVVFDTVSNRIEIDVNSIRPIATESCNFGHNNGEKAEVRITYDSPKNDLRVSLLYPSSEEKCHVSATVPLEKEVEDWVSVGFSATSGSKKETTETHNVLSWSFSSNFI

Entity 2 branched

description	2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
formula_weight	424.4 kDa
src_method	man
entity_count	2

Entity 3 non-polymer

description	2-acetamido-2-deoxy-beta-D-glucopyranose
formula_weight	221.2 kDa
src_method	man
entity_count	4

Entity 4 non-polymer

description	SULFATE ION
formula_weight	96.1 kDa
src_method	syn
entity_count	2

Entity 5 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	230

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6. Citations (2)

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length_a	85.650 Å
length_b	92.570 Å
length_c	67.280 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	8

space_group	P 21 21 2
int_tables_number	18
crystal_system	—

resolution	1.900 Å
resolution_low	33.710 Å
r_factor	0.2080
r_work	0.2080
r_free	0.2420

fit	/app/data/saxs_computation/av/1avb/1avb.fit
pddf	/app/data/pr_computation/av/1avb/1avb.pr.out
profile	/app/data/saxs_computation/av/1avb/1avb.dat

ARCELIN-1 FROM PHASEOLUS VULGARIS L

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction