1aw7

Q136A MUTANT OF TOXIC SHOCK SYNDROME TOXIN-1 FROM S. AUREUS

Method: X-RAY DIFFRACTION Dmax: 116.9 Å Quality: REASONABLE

1. Protein Identity and Related Structures Protein Identity & Related Structures

TOXIC SHOCK SYNDROME TOXIN-1

Staphylococcus aureus

UniProt P06886

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein monomer Monomer Protein × 1 PDB declaration: monomeric(1) Consistent with protein copy count Chain A; UniProt 41–234 Mutation:CHAIN A, Q136A, CHAIN B, Q336A, CHAIN C, Q536A, CHAIN D, Q736A No other associated polymer X-RAY DIFFRACTION X-ray crystallization conditions:pH 7.5;pH 7.5 Resolution 1.95 Å
2 Protein monomer Monomer Protein × 1 PDB declaration: monomeric(1) Consistent with protein copy count Chain B; UniProt 41–234 Mutation:CHAIN A, Q136A, CHAIN B, Q336A, CHAIN C, Q536A, CHAIN D, Q736A No other associated polymer X-RAY DIFFRACTION X-ray crystallization conditions:pH 7.5;pH 7.5 Resolution 1.95 Å
3 Protein monomer Monomer Protein × 1 PDB declaration: monomeric(1) Consistent with protein copy count Chain C; UniProt 41–234 Mutation:CHAIN A, Q136A, CHAIN B, Q336A, CHAIN C, Q536A, CHAIN D, Q736A No other associated polymer X-RAY DIFFRACTION X-ray crystallization conditions:pH 7.5;pH 7.5 Resolution 1.95 Å
4 Protein monomer Monomer Protein × 1 PDB declaration: monomeric(1) Consistent with protein copy count Chain D; UniProt 41–234 Mutation:CHAIN A, Q136A, CHAIN B, Q336A, CHAIN C, Q536A, CHAIN D, Q736A No other associated polymer X-RAY DIFFRACTION X-ray crystallization conditions:pH 7.5;pH 7.5 Resolution 1.95 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

11 other PDB entries and 25 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name TSST_STAAU
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–194; UniProt 41–234 Author chain B; PDBConstruct 1–194; UniProt 41–234 Author chain C; PDBConstruct 1–194; UniProt 41–234 Author chain D; PDBConstruct 1–194; UniProt 41–234

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 1aw7

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 1aw7
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2. Structure Basics 2. Structure Basics

Entry ID entry_id1aw7
Deposition date deposition_date1997-10-11
Structure title titleQ136A MUTANT OF TOXIC SHOCK SYNDROME TOXIN-1 FROM S. AUREUS
Keywords keywordsTOXIN, SUPERANTIGEN; TOXIN
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier34.71
Radius of gyration Rg (electron density) rg_electron34.67
Forward intensity I(0) i0117981000.00
Molecular weight molecular_weight88067.0 kDa
Excluded volume excluded_volume110700 ų
Envelope volume envelope_volume143910 ų
Hydration-shell volume shell_volume36397 ų
Envelope diameter envelope_diameter121.9
Shell Rg shell_rg38.98
Envelope Rg envelope_rg34.38
Shape Rg shape_rg34.64
Total Rg total_rg35.08
Total atoms total_atoms6220
Residues n_residues776
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax116.9
Rg (real space) rg_real34.99
Rg uncertainty (real space) rg_real_error1.14
I(0) (real space) i0_real1.1800e+08
I(0) uncertainty (real space) i0_real_error2.1240e+06
Rg (reciprocal space) rg_reciprocal34.82
I(0) (reciprocal space) i0_reciprocal118000000.0000
Solution quality estimate total_estimate0.6163
Solution quality rating solution_quality REASONABLE a REASONABLE solution
P(r) peaks n_peaks2
Primary peak position r_peak_primary30.5
Skewness Skewness skewness0.496
Kurtosis Kurtosis kurtosis-0.546
Angular range angular_range— – 0.2300 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha27920000.0000
Real-space data points n_real_points47
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.669; Stabil: 1.000; Sysdev: 0.122; Positv: 1.000; Valcen: 0.825; Smooth: 0.810

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (2)

7. Fold Classification (SCOP + CATH) 16 domains

SCOP 2.08 (8 domains)

Domain ID domain_idd1aw7a1
Class classb — All beta proteins
Fold Fold foldb.40 — OB-fold
Superfamily Superfamily superfamilyb.40.2 — Bacterial enterotoxins
Family Family familyb.40.2.2 — Superantigen toxins, N-terminal domain
Domain ID domain_idd1aw7a2
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.15 — beta-Grasp (ubiquitin-like)
Superfamily Superfamily superfamilyd.15.6 — Superantigen toxins, C-terminal domain
Family Family familyd.15.6.1 — Superantigen toxins, C-terminal domain
Domain ID domain_idd1aw7b1
Class classb — All beta proteins
Fold Fold foldb.40 — OB-fold
Superfamily Superfamily superfamilyb.40.2 — Bacterial enterotoxins
Family Family familyb.40.2.2 — Superantigen toxins, N-terminal domain
Domain ID domain_idd1aw7b2
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.15 — beta-Grasp (ubiquitin-like)
Superfamily Superfamily superfamilyd.15.6 — Superantigen toxins, C-terminal domain
Family Family familyd.15.6.1 — Superantigen toxins, C-terminal domain
Domain ID domain_idd1aw7c1
Class classb — All beta proteins
Fold Fold foldb.40 — OB-fold
Superfamily Superfamily superfamilyb.40.2 — Bacterial enterotoxins
Family Family familyb.40.2.2 — Superantigen toxins, N-terminal domain
Domain ID domain_idd1aw7c2
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.15 — beta-Grasp (ubiquitin-like)
Superfamily Superfamily superfamilyd.15.6 — Superantigen toxins, C-terminal domain
Family Family familyd.15.6.1 — Superantigen toxins, C-terminal domain
Domain ID domain_idd1aw7d1
Class classb — All beta proteins
Fold Fold foldb.40 — OB-fold
Superfamily Superfamily superfamilyb.40.2 — Bacterial enterotoxins
Family Family familyb.40.2.2 — Superantigen toxins, N-terminal domain
Domain ID domain_idd1aw7d2
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.15 — beta-Grasp (ubiquitin-like)
Superfamily Superfamily superfamilyd.15.6 — Superantigen toxins, C-terminal domain
Family Family familyd.15.6.1 — Superantigen toxins, C-terminal domain

CATH v4.4 (8 domains)

Domain ID domain_id1aw7A01
Class class3 — Alpha Beta
Architecture architecture10 — Roll
Topology topology20 — Ubiquitin-like (UB roll)
Homologous superfamily homologous superfamily120
Domain ID domain_id1aw7A02
Class class2 — Mainly Beta
Architecture architecture40 — Beta Barrel
Topology topology50 — OB fold (Dihydrolipoamide Acetyltransferase, E2P)
Homologous superfamily homologous superfamily110
Domain ID domain_id1aw7B01
Class class3 — Alpha Beta
Architecture architecture10 — Roll
Topology topology20 — Ubiquitin-like (UB roll)
Homologous superfamily homologous superfamily120
Domain ID domain_id1aw7B02
Class class2 — Mainly Beta
Architecture architecture40 — Beta Barrel
Topology topology50 — OB fold (Dihydrolipoamide Acetyltransferase, E2P)
Homologous superfamily homologous superfamily110
Domain ID domain_id1aw7C01
Class class3 — Alpha Beta
Architecture architecture10 — Roll
Topology topology20 — Ubiquitin-like (UB roll)
Homologous superfamily homologous superfamily120
Domain ID domain_id1aw7C02
Class class2 — Mainly Beta
Architecture architecture40 — Beta Barrel
Topology topology50 — OB fold (Dihydrolipoamide Acetyltransferase, E2P)
Homologous superfamily homologous superfamily110
Domain ID domain_id1aw7D01
Class class3 — Alpha Beta
Architecture architecture10 — Roll
Topology topology20 — Ubiquitin-like (UB roll)
Homologous superfamily homologous superfamily120
Domain ID domain_id1aw7D02
Class class2 — Mainly Beta
Architecture architecture40 — Beta Barrel
Topology topology50 — OB fold (Dihydrolipoamide Acetyltransferase, E2P)
Homologous superfamily homologous superfamily110

8. Citations (3)

9. Files and Curves (10)