1b5q
A 30 ANGSTROM U-SHAPED CATALYTIC TUNNEL IN THE CRYSTAL STRUCTURE OF POLYAMINE OXIDASE
1. Protein Identity and Related Structures Protein Identity & Related Structures
No usable UniProt protein identity is available for this entry.
The relationship tables retain this entry's assembly and composition data, but cross-PDB links for the same protein cannot be established reliably without a unified protein identity.
Assembly Composition of the Current Entry
| Assembly | Physical composition | Protein state | 蛋白 / DNA / RNA / 其他Polymer | Data consistency |
|---|---|---|---|---|
| 1 | Other combination | Homooligomer | 6 / 0 / 0 / 6 | Consistent with protein count |
| 2 | Other combination | Homooligomer | 2 / 0 / 0 / 2 | Consistent with protein count |
| 3 | Other combination | Homooligomer | 2 / 0 / 0 / 2 | Consistent with protein count |
The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.
2. Structure Basics 2. Structure Basics
| Entry ID entry_id | 1b5q |
| Deposition date deposition_date | 1999-01-07 |
| Structure title title | A 30 ANGSTROM U-SHAPED CATALYTIC TUNNEL IN THE CRYSTAL STRUCTURE OF POLYAMINE OXIDASE |
| Keywords keywords | FLAVIN-DEPENDENT AMINE OXIDASE, OXIDOREDUCTASE; OXIDOREDUCTASE |
| Experimental Method method | X-RAY DIFFRACTION |
3. Official assembly/model SAXS Official SAXS Profiles
This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.
1b5q__assembly_1__model_1
Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)
1b5q__assembly_1__model_1 | I(q)
1b5q__assembly_1__model_1 | P(r) · Pending
| Rg（Guinier） | 45.71 Å |
| Rg (electron density) | 45.46 Å |
| Total Rg | 45.69 Å |
| Atom count | 22862 |
| Residues | 2766 |
| Excluded volume | 405310 ų |
| Maximum q | 0.500 Å⁻¹ |
| Assembly | Model | Structure unit | Oligomeric description | Status | CRYSOL | Actions |
|---|---|---|---|---|---|---|
| 1 | 1 | 1b5q__assembly_1__model_1 |
hexameric （6） | Success | 4.1.3-1-20251215 (887e7ef) | View Download |
| 2 | 1 | 1b5q__assembly_2__model_1 |
dimeric （2） | Success | 4.1.3-1-20251215 (887e7ef) | View Download |
| 3 | 1 | 1b5q__assembly_3__model_1 |
dimeric （2） | Success | 4.1.3-1-20251215 (887e7ef) | View Download |
4. Crystallography and Experiment 4. Crystallography & Experiment
5. Entities and Polymers Entities & Polymers (6)
6. Fold Classification (SCOP + CATH) 12 domains
SCOP 2.08 (6 domains)
| Domain ID domain_id | d1b5qa1 |
| Class class | c — Alpha and beta proteins (a/b) |
| Fold Fold fold | c.3 — FAD/NAD(P)-binding domain |
| Superfamily Superfamily superfamily | c.3.1 — FAD/NAD(P)-binding domain |
| Family Family family | c.3.1.2 — FAD-linked reductases, N-terminal domain |
| Domain ID domain_id | d1b5qa2 |
| Class class | d — Alpha and beta proteins (a+b) |
| Fold Fold fold | d.16 — FAD-linked reductases, C-terminal domain |
| Superfamily Superfamily superfamily | d.16.1 — FAD-linked reductases, C-terminal domain |
| Family Family family | d.16.1.5 — L-aminoacid/polyamine oxidase |
| Domain ID domain_id | d1b5qb1 |
| Class class | c — Alpha and beta proteins (a/b) |
| Fold Fold fold | c.3 — FAD/NAD(P)-binding domain |
| Superfamily Superfamily superfamily | c.3.1 — FAD/NAD(P)-binding domain |
| Family Family family | c.3.1.2 — FAD-linked reductases, N-terminal domain |
| Domain ID domain_id | d1b5qb2 |
| Class class | d — Alpha and beta proteins (a+b) |
| Fold Fold fold | d.16 — FAD-linked reductases, C-terminal domain |
| Superfamily Superfamily superfamily | d.16.1 — FAD-linked reductases, C-terminal domain |
| Family Family family | d.16.1.5 — L-aminoacid/polyamine oxidase |
| Domain ID domain_id | d1b5qc1 |
| Class class | c — Alpha and beta proteins (a/b) |
| Fold Fold fold | c.3 — FAD/NAD(P)-binding domain |
| Superfamily Superfamily superfamily | c.3.1 — FAD/NAD(P)-binding domain |
| Family Family family | c.3.1.2 — FAD-linked reductases, N-terminal domain |
| Domain ID domain_id | d1b5qc2 |
| Class class | d — Alpha and beta proteins (a+b) |
| Fold Fold fold | d.16 — FAD-linked reductases, C-terminal domain |
| Superfamily Superfamily superfamily | d.16.1 — FAD-linked reductases, C-terminal domain |
| Family Family family | d.16.1.5 — L-aminoacid/polyamine oxidase |
CATH v4.4 (6 domains)
| Domain ID domain_id | 1b5qA01 |
| Class class | 3 — Alpha Beta |
| Architecture architecture | 50 — 3-Layer(bba) Sandwich |
| Topology topology | 50 — FAD/NAD(P)-binding domain |
| Homologous superfamily homologous superfamily | 60 — FAD/NAD(P)-binding domain |
| Domain ID domain_id | 1b5qA02 |
| Class class | 3 — Alpha Beta |
| Architecture architecture | 90 — Alpha-Beta Complex |
| Topology topology | 660 — Polyamine Oxidase; Chain A, domain 2 |
| Homologous superfamily homologous superfamily | 10 — |
| Domain ID domain_id | 1b5qB01 |
| Class class | 3 — Alpha Beta |
| Architecture architecture | 50 — 3-Layer(bba) Sandwich |
| Topology topology | 50 — FAD/NAD(P)-binding domain |
| Homologous superfamily homologous superfamily | 60 — FAD/NAD(P)-binding domain |
| Domain ID domain_id | 1b5qB02 |
| Class class | 3 — Alpha Beta |
| Architecture architecture | 90 — Alpha-Beta Complex |
| Topology topology | 660 — Polyamine Oxidase; Chain A, domain 2 |
| Homologous superfamily homologous superfamily | 10 — |
| Domain ID domain_id | 1b5qC01 |
| Class class | 3 — Alpha Beta |
| Architecture architecture | 50 — 3-Layer(bba) Sandwich |
| Topology topology | 50 — FAD/NAD(P)-binding domain |
| Homologous superfamily homologous superfamily | 60 — FAD/NAD(P)-binding domain |
| Domain ID domain_id | 1b5qC02 |
| Class class | 3 — Alpha Beta |
| Architecture architecture | 90 — Alpha-Beta Complex |
| Topology topology | 660 — Polyamine Oxidase; Chain A, domain 2 |
| Homologous superfamily homologous superfamily | 10 — |