1b5s

DIHYDROLIPOYL TRANSACETYLASE (E.C.2.3.1.12) CATALYTIC DOMAIN (RESIDUES 184-425) FROM BACILLUS STEAROTHERMOPHILUS

Method: X-RAY DIFFRACTION Dmax: 142.5 Å Quality: GOOD

1. Protein Identity and Related Structures Protein Identity & Related Structures

DIHYDROLIPOAMIDE ACETYLTRANSFERASE

OrganismNot specified

UniProt P11961

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein homooligomer Homooligomer Protein × 60 PDB declaration: 60-meric(60) Consistent with protein copy count Chain A; UniProt 184–425 Chain B; UniProt 184–425 Chain C; UniProt 184–425 Chain D; UniProt 184–425 Chain E; UniProt 184–425 Fragment:CATALYTIC DOMAIN No other associated polymer X-RAY DIFFRACTION X-ray crystallization conditions:pH 7;pH 7 Resolution 4.40 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

16 other PDB entries and 21 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name ODP2_BACST
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–242; UniProt 184–425 Author chain B; PDBConstruct 1–242; UniProt 184–425 Author chain C; PDBConstruct 1–242; UniProt 184–425 Author chain D; PDBConstruct 1–242; UniProt 184–425 Author chain E; PDBConstruct 1–242; UniProt 184–425

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 1b5s

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 1b5s
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2. Structure Basics 2. Structure Basics

Entry ID entry_id1b5s
Deposition date deposition_date1999-01-10
Structure title titleDIHYDROLIPOYL TRANSACETYLASE (E.C.2.3.1.12) CATALYTIC DOMAIN (RESIDUES 184-425) FROM BACILLUS STEAROTHERMOPHILUS
Keywords keywordsDIHYDROLIPOYL TRANSACETYLASE, PYRUVATE DEHYDROGENASE, E2P, DIHYDROLIPOYL ACETYLTRANSFERASE, ACYLTRANSFERASE; ACYLTRANSFERASE
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier51.83
Radius of gyration Rg (electron density) rg_electron51.43
Forward intensity I(0) i0155013000.00
Molecular weight molecular_weight83738.0 kDa
Excluded volume excluded_volume96450 ų
Envelope volume envelope_volume264020 ų
Hydration-shell volume shell_volume43735 ų
Envelope diameter envelope_diameter147.6
Shell Rg shell_rg57.10
Envelope Rg envelope_rg46.38
Shape Rg shape_rg51.43
Total Rg total_rg51.67
Total atoms total_atoms5980
Residues n_residues1210
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax142.5
Rg (real space) rg_real51.62
Rg uncertainty (real space) rg_real_error1.13
I(0) (real space) i0_real1.5500e+08
I(0) uncertainty (real space) i0_real_error2.8130e+06
Rg (reciprocal space) rg_reciprocal51.97
I(0) (reciprocal space) i0_reciprocal155100000.0000
Solution quality estimate total_estimate0.8030
Solution quality rating solution_quality GOOD a GOOD solution
P(r) peaks n_peaks3
Primary peak position r_peak_primary61.8
Skewness Skewness skewness-0.163
Kurtosis Kurtosis kurtosis-0.838
Angular range angular_range— – 0.1500 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha4767000.0000
Real-space data points n_real_points31
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.870; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.822; Smooth: 0.000

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (1)

7. Fold Classification (SCOP + CATH) 5 domains

SCOP 2.08 (5 domains)

Domain ID domain_idd1b5sa_
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.43 — CoA-dependent acyltransferases
Superfamily Superfamily superfamilyc.43.1 — CoA-dependent acyltransferases
Family Family familyc.43.1.1 — CAT-like
Domain ID domain_idd1b5sb_
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.43 — CoA-dependent acyltransferases
Superfamily Superfamily superfamilyc.43.1 — CoA-dependent acyltransferases
Family Family familyc.43.1.1 — CAT-like
Domain ID domain_idd1b5sc_
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.43 — CoA-dependent acyltransferases
Superfamily Superfamily superfamilyc.43.1 — CoA-dependent acyltransferases
Family Family familyc.43.1.1 — CAT-like
Domain ID domain_idd1b5sd_
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.43 — CoA-dependent acyltransferases
Superfamily Superfamily superfamilyc.43.1 — CoA-dependent acyltransferases
Family Family familyc.43.1.1 — CAT-like
Domain ID domain_idd1b5se_
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.43 — CoA-dependent acyltransferases
Superfamily Superfamily superfamilyc.43.1 — CoA-dependent acyltransferases
Family Family familyc.43.1.1 — CAT-like

8. Citations (1)

9. Files and Curves (10)