LYSYL-TRNA SYNTHETASE (LYSS)

Method: X-RAY DIFFRACTION D_max: 97.1 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	1bbw
deposition_date	1998-04-24
title	LYSYL-TRNA SYNTHETASE (LYSS)
keywords	LIGASE, AMINOACYL-TRNA SYNTHETASE, PROTEIN BIOSYNTHESIS; LIGASE
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	29.87 Å
rg_electron	29.15 Å
i0	46138900.00
molecular_weight	51585.0 kDa
excluded_volume	63945 Å³
envelope_volume	86934 Å³
shell_volume	26655 Å³
envelope_diameter	101.7 Å
shell_rg	34.21 Å
envelope_rg	28.97 Å
shape_rg	29.17 Å
total_rg	29.60 Å
total_atoms	3638
n_residues	469
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	97.1 Å
rg_real	30.05 Å
rg_real_error	0.76 Å
i0_real	4.6140e+07
i0_real_error	6.8160e+05
rg_reciprocal	29.98 Å
i0_reciprocal	46140000.0000
total_estimate	0.8722
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	29.3 Å
skewness	0.428
kurtosis	-0.548
angular_range	— – 0.2650 Å⁻¹
current_alpha	0.0000
highest_alpha	6167000.0000
n_real_points	54
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.864; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.872; Smooth: 0.871

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4. Crystallography & Experiment

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5. Entities & Polymer Info (2)

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6. Citations (3)

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length_a	182.936 Å
length_b	182.936 Å
length_c	92.516 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	120.00 °
z_pdb	12

space_group	P 61 2 2
int_tables_number	178
crystal_system	—

resolution	2.700 Å
resolution_low	15.000 Å
r_factor	0.2520
r_work	0.2520
r_free	0.3080

description	PROTEIN (LYSYL-TRNA SYNTHETASE)
formula_weight	57546.1 kDa
ec_number	6.1.1.6
src_method	man
entity_count	1

type	polypeptide(L)
strand_id	A
atom_count	3752

LYSYL-TRNA SYNTHETASE (LYSS)

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction

5. Entities & Polymer Info (2)

Entity 1 polymer

Polymer

Source

Entity 2 water

6. Citations (3)

7. Files & Curves (10)

Files (7)

Curves (3)

organism	Escherichia coli
ncbi_taxonomy_id	83333
host_organism	Escherichia coli

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	114

fit	/app/data/saxs_computation/bb/1bbw/1bbw.fit
pddf	/app/data/pr_computation/bb/1bbw/1bbw.pr.out
profile	/app/data/saxs_computation/bb/1bbw/1bbw.dat