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1bdv

ARC FV10 COCRYSTAL

Method: X-RAY DIFFRACTION D_max: 74.8 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	1bdv
deposition_date	1998-05-11
title	ARC FV10 COCRYSTAL
keywords	GENE-REGULATING PROTEIN, GENE REGULATION-DNA COMPLEX; GENE REGULATION/DNA
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	22.58 Å
rg_electron	21.61 Å
i0	33401800.00
molecular_weight	35233.0 kDa
excluded_volume	40114 Å³
envelope_volume	50926 Å³
shell_volume	20253 Å³
envelope_diameter	75.8 Å
shell_rg	27.60 Å
envelope_rg	21.72 Å
shape_rg	21.56 Å
total_rg	22.34 Å
total_atoms	2418
n_residues	236
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	74.8 Å
rg_real	22.64 Å
rg_real_error	0.54 Å
i0_real	3.3400e+07
i0_real_error	4.7620e+05
rg_reciprocal	22.63 Å
i0_reciprocal	33400000.0000
total_estimate	0.8849
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	23.8 Å
skewness	0.425
kurtosis	-0.331
angular_range	— – 0.3500 Å⁻¹
current_alpha	0.0000
highest_alpha	3753000.0000
n_real_points	67
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.858; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.962; Smooth: 0.964

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4. Crystallography & Experiment

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5. Entities & Polymer Info (4)

Entity 1 polymer

description	;DNA (5'-D(TPAPTPAPGPTPAPGPAPGPTPGPCPTPTPCPTPAPTPCPAPT)-3') ;
formula_weight	6756.4 kDa
src_method	syn
entity_count	1

Polymer

type	polydeoxyribonucleotide
strand_id	E
atom_count	2452

TATAGTAGAGTGCTTCTATCAT

Entity 2 polymer

description	;DNA (5'-D(APAPTPGPAPTPAPGPAPAPGPCPAPCPTPCPTPAPCPTPAPT)-3') ;
formula_weight	6743.4 kDa
src_method	syn
entity_count	1

Polymer

type	polydeoxyribonucleotide
strand_id	F

AATGATAGAAGCACTCTACTAT

Entity 3 polymer

description	PROTEIN (ARC FV10 REPRESSOR)
formula_weight	6190.2 kDa
mutation	F10V
src_method	man
entity_count	4

Polymer

type	polypeptide(L)
strand_id	A,B,C,D

MKGMSKMPQVNLRWPREVLDLVRKVAEENGRSVNSEIYQRVMESFKKEGRIGA

Source

organism	Enterobacteria phage P22
ncbi_taxonomy_id	10754
host_organism	Escherichia coli

Entity 4 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	34

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6. Citations (2)

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length_a	62.840 Å
length_b	56.310 Å
length_c	52.980 Å
angle_alpha	90.00 °
angle_beta	105.03 °
angle_gamma	90.00 °
z_pdb	8

space_group	P 1 21 1
int_tables_number	4
crystal_system	—

resolution	2.800 Å
resolution_low	20.000 Å
r_factor	0.2435
r_work	0.2435
r_free	0.3010

fit	/app/data/saxs_computation/bd/1bdv/1bdv.fit
pddf	/app/data/pr_computation/bd/1bdv/1bdv.pr.out
profile	/app/data/saxs_computation/bd/1bdv/1bdv.dat

ARC FV10 COCRYSTAL

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction

5. Entities & Polymer Info (4)

Entity 1 polymer

Polymer

Entity 2 polymer

Polymer

Entity 3 polymer

Polymer

Source

Entity 4 water

6. Citations (2)

7. Files & Curves (10)

Files (7)

Curves (3)