1bdz
;NMR STRUCTURE OF A 14 MER EXTENDED C-MYB COGNATE DNA SEQUENCE 5'D(APCPAPAP CPTPGPCP APGPTPTP GPT)3', MINIMIZED AVERAGE STRUCTURE ;
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 1bdz |
| deposition_date | 1998-05-12 |
| title | ;NMR STRUCTURE OF A 14 MER EXTENDED C-MYB COGNATE DNA SEQUENCE 5'D(APCPAPAP CPTPGPCP APGPTPTP GPT)3', MINIMIZED AVERAGE STRUCTURE ; |
| keywords | DEOXYRIBONUCLEIC ACID, DUPLEX DNA, C-MYB COGNATE SITE, DNA; DNA |
| method | SOLUTION NMR |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 16.88 Å |
| rg_electron | 16.84 Å |
| i0 | 3560570.00 |
| molecular_weight | 8550.0 kDa |
| excluded_volume | 8322 ų |
| envelope_volume | 12668 ų |
| shell_volume | 7429 ų |
| envelope_diameter | 56.4 Å |
| shell_rg | 19.70 Å |
| envelope_rg | 16.74 Å |
| shape_rg | 16.72 Å |
| total_rg | 17.38 Å |
| total_atoms | 888 |
| n_residues | 28 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 55.8 Å |
| rg_real | 17.08 Å |
| rg_real_error | 0.47 Å |
| i0_real | 3.5610e+06 |
| i0_real_error | 4.7630e+04 |
| rg_reciprocal | 17.06 Å |
| i0_reciprocal | 3561000.0000 |
| total_estimate | 0.7353 |
| solution_quality | REASONABLE a REASONABLE solution |
| n_peaks | 2 |
| r_peak_primary | 12.5 Å |
| skewness | 0.463 |
| kurtosis | -0.591 |
| angular_range | — – 0.4700 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 271500.0000 |
| n_real_points | 77 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.721; Stabil: 0.997; Sysdev: 1.000; Positv: 1.000; Valcen: 0.399; Smooth: 0.000 |