1bey

ANTIBODY TO CAMPATH-1H HUMANIZED FAB

Method: X-RAY DIFFRACTION Dmax: 91.2 Å Quality: GOOD

1. Protein Identity and Related Structures Protein Identity & Related Structures

No usable UniProt protein identity is available for this entry.

七张关系表仍保留该条目的 assembly 与组成信息,但缺少统一蛋白身份时,不能可靠建立跨 PDB 的同蛋白Chain接。

Assembly Composition of the Current Entry

Assembly Oligomeric State 实体与Construct证据 Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer 蛋白 2 / DNA 0 / RNA 0 / 其他Polymer 0 PDB declaration: dimeric Entity 1:CAMPATH-1H ANTIBODY × 1 Entity 2:CAMPATH-1H ANTIBODY × 1 缺少 UniProt 身份时不显示参考序列区间 Entity 1Fragment:FAB FRAGMENT Entity 2Fragment:FAB FRAGMENT No recorded non-water small molecule X-RAY DIFFRACTION X-ray crystallization conditions:pH 7;pH 7.0 Resolution 3.25 Å R-free 0.306

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 1bey

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 1bey
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2. Structure Basics 2. Structure Basics

Entry ID entry_id1bey
Deposition date deposition_date1998-05-18
Structure title titleANTIBODY TO CAMPATH-1H HUMANIZED FAB
Keywords keywordsANTIBODY, FAB, CAMPATH-1H, CD52; ANTIBODY
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier24.87
Radius of gyration Rg (electron density) rg_electron23.95
Forward intensity I(0) i036231500.00
Molecular weight molecular_weight46184.0 kDa
Excluded volume excluded_volume57656 ų
Envelope volume envelope_volume70508 ų
Hydration-shell volume shell_volume24893 ų
Envelope diameter envelope_diameter80.9
Shell Rg shell_rg30.68
Envelope Rg envelope_rg23.69
Shape Rg shape_rg23.92
Total Rg total_rg24.83
Total atoms total_atoms3252
Residues n_residues424
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax91.2
Rg (real space) rg_real24.84
Rg uncertainty (real space) rg_real_error1.00
I(0) (real space) i0_real3.6230e+07
I(0) uncertainty (real space) i0_real_error5.9780e+05
Rg (reciprocal space) rg_reciprocal24.85
I(0) (reciprocal space) i0_reciprocal36230000.0000
Solution quality estimate total_estimate0.7694
Solution quality rating solution_quality GOOD a GOOD solution
P(r) peaks n_peaks3
Primary peak position r_peak_primary29.0
Skewness Skewness skewness0.279
Kurtosis Kurtosis kurtosis-0.454
Angular range angular_range— – 0.3200 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha9881000.0000
Real-space data points n_real_points64
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.721; Stabil: 0.999; Sysdev: 1.000; Positv: 1.000; Valcen: 0.837; Smooth: 0.000

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (2)

7. Fold Classification (SCOP + CATH) 9 domains

SCOP 2.08 (5 domains)

Domain ID domain_idd1beyh1
Class classb — All beta proteins
Fold Fold foldb.1 — Immunoglobulin-like beta-sandwich
Superfamily Superfamily superfamilyb.1.1 — Immunoglobulin
Family Family familyb.1.1.1 — V set domains (antibody variable domain-like)
Domain ID domain_idd1beyh2
Class classb — All beta proteins
Fold Fold foldb.1 — Immunoglobulin-like beta-sandwich
Superfamily Superfamily superfamilyb.1.1 — Immunoglobulin
Family Family familyb.1.1.2 — C1 set domains (antibody constant domain-like)
Domain ID domain_idd1beyh3
Class classl — Artifacts
Fold Fold foldl.1 — Tags
Superfamily Superfamily superfamilyl.1.1 — Tags
Family Family familyl.1.1.1 — Tags
Domain ID domain_idd1beyl1
Class classb — All beta proteins
Fold Fold foldb.1 — Immunoglobulin-like beta-sandwich
Superfamily Superfamily superfamilyb.1.1 — Immunoglobulin
Family Family familyb.1.1.1 — V set domains (antibody variable domain-like)
Domain ID domain_idd1beyl2
Class classb — All beta proteins
Fold Fold foldb.1 — Immunoglobulin-like beta-sandwich
Superfamily Superfamily superfamilyb.1.1 — Immunoglobulin
Family Family familyb.1.1.2 — C1 set domains (antibody constant domain-like)

CATH v4.4 (4 domains)

Domain ID domain_id1beyH01
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily10 — Immunoglobulins
Domain ID domain_id1beyH02
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily10 — Immunoglobulins
Domain ID domain_id1beyL01
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily10 — Immunoglobulins
Domain ID domain_id1beyL02
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology40 — Immunoglobulin-like
Homologous superfamily homologous superfamily10 — Immunoglobulins

8. Citations (1)

9. Files and Curves (10)