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1bhn

NUCLEOSIDE DIPHOSPHATE KINASE ISOFORM A FROM BOVINE RETINA

Method: X-RAY DIFFRACTION D_max: 88.5 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	1bhn
deposition_date	1998-06-10
title	NUCLEOSIDE DIPHOSPHATE KINASE ISOFORM A FROM BOVINE RETINA
keywords	PHOSPHOTRANSFERASE; PHOSPHOTRANSFERASE
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	28.55 Å
rg_electron	27.36 Å
i0	192204000.00
molecular_weight	107510.0 kDa
excluded_volume	133360 Å³
envelope_volume	152040 Å³
shell_volume	43961 Å³
envelope_diameter	92.7 Å
shell_rg	36.64 Å
envelope_rg	27.37 Å
shape_rg	27.39 Å
total_rg	28.08 Å
total_atoms	7542
n_residues	906
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	88.5 Å
rg_real	28.26 Å
rg_real_error	0.40 Å
i0_real	1.9220e+08
i0_real_error	2.5940e+06
rg_reciprocal	28.35 Å
i0_reciprocal	192200000.0000
total_estimate	0.8908
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	39.5 Å
skewness	0.019
kurtosis	-0.510
angular_range	— – 0.2800 Å⁻¹
current_alpha	0.0000
highest_alpha	49270000.0000
n_real_points	57
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.870; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.976; Smooth: 0.991

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4. Crystallography & Experiment

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5. Entities & Polymer Info (4)

Entity 1 polymer

description	NUCLEOSIDE DIPHOSPHATE TRANSFERASE
formula_weight	17285.0 kDa
ec_number	2.7.4.6
src_method	man
entity_count	6

Polymer

type	polypeptide(L)
strand_id	A,B,C,D,E,F
atom_count	7848

MANSERTFIAIKPDGVQRGLIGEIIKRFEQKGFRLVAMKFMRASEDLLKEHYIDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIALWFHPEELVNYKSCAQNWIYE

Source

organism	Bos taurus
common_name	cattle
ncbi_taxonomy_id	9913
host_organism	Escherichia coli

Entity 2 non-polymer

description	GUANOSINE-3',5'-MONOPHOSPHATE
formula_weight	345.2 kDa
src_method	syn
entity_count	6

Entity 3 non-polymer

description	GUANOSINE-5'-DIPHOSPHATE
formula_weight	443.2 kDa
src_method	syn
entity_count	6

Entity 4 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	306

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6. Citations (1)

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length_a	89.880 Å
length_b	92.110 Å
length_c	131.630 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	24

space_group	P 21 21 21
int_tables_number	19
crystal_system	—

resolution	2.400 Å
resolution_low	20.000 Å
r_factor	—
r_work	—
r_free	—

fit	/app/data/saxs_computation/bh/1bhn/1bhn.fit
pddf	/app/data/pr_computation/bh/1bhn/1bhn.pr.out
profile	/app/data/saxs_computation/bh/1bhn/1bhn.dat

NUCLEOSIDE DIPHOSPHATE KINASE ISOFORM A FROM BOVINE RETINA

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction