1bjh
;HAIRPIN LOOPS CONSISTING OF SINGLE ADENINE RESIDUES CLOSED BY SHEARED A(DOT)A AND G(DOT)G PAIRS FORMED BY THE DNA TRIPLETS AAA AND GAG: SOLUTION STRUCTURE OF THE D(GTACAAAGTAC) HAIRPIN, NMR, 16 STRUCTURES ;
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 1bjh |
| deposition_date | 1997-07-25 |
| title | ;HAIRPIN LOOPS CONSISTING OF SINGLE ADENINE RESIDUES CLOSED BY SHEARED A(DOT)A AND G(DOT)G PAIRS FORMED BY THE DNA TRIPLETS AAA AND GAG: SOLUTION STRUCTURE OF THE D(GTACAAAGTAC) HAIRPIN, NMR, 16 STRUCTURES ; |
| keywords | DNA LOOP, SHEARED A:A, AAA LOOP, SINGLE RESIDUE LOOP, DEOXYRIBONUCLEIC ACID, DNA; DNA |
| method | SOLUTION NMR |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 8.51 Å |
| rg_electron | 8.41 Å |
| i0 | 115178000.00 |
| molecular_weight | 53733.0 kDa |
| excluded_volume | 51935 ų |
| envelope_volume | 4185 ų |
| shell_volume | 4647 ų |
| envelope_diameter | 26.5 Å |
| shell_rg | 12.88 Å |
| envelope_rg | 8.84 Å |
| shape_rg | 8.20 Å |
| total_rg | 8.81 Å |
| total_atoms | 5584 |
| n_residues | 176 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 26.0 Å |
| rg_real | 8.46 Å |
| rg_real_error | 0.22 Å |
| i0_real | 1.1520e+08 |
| i0_real_error | 1.0460e+06 |
| rg_reciprocal | 8.46 Å |
| i0_reciprocal | 115200000.0000 |
| total_estimate | 0.9070 |
| solution_quality | EXCELLENT a EXCELLENT solution |
| n_peaks | 2 |
| r_peak_primary | 10.5 Å |
| skewness | 0.011 |
| kurtosis | -0.645 |
| angular_range | — – 0.5000 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 9383.0000 |
| n_real_points | 80 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.965; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 1.000; Smooth: 0.890 |