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1bml

COMPLEX OF THE CATALYTIC DOMAIN OF HUMAN PLASMIN AND STREPTOKINASE

Method: X-RAY DIFFRACTION D_max: 100.0 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	1bml
deposition_date	1999-05-25
title	COMPLEX OF THE CATALYTIC DOMAIN OF HUMAN PLASMIN AND STREPTOKINASE
keywords	HUMAN PLASMIN, STREPTOKINASE, BLOOD CLOTTING; BLOOD CLOTTING
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	34.15 Å
rg_electron	33.38 Å
i0	252942000.00
molecular_weight	126860.0 kDa
excluded_volume	158650 Å³
envelope_volume	216670 Å³
shell_volume	52629 Å³
envelope_diameter	100.5 Å
shell_rg	41.73 Å
envelope_rg	32.20 Å
shape_rg	33.38 Å
total_rg	34.04 Å
total_atoms	8940
n_residues	1136
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	100.0 Å
rg_real	33.91 Å
rg_real_error	0.56 Å
i0_real	2.5290e+08
i0_real_error	3.5540e+06
rg_reciprocal	34.06 Å
i0_reciprocal	253000000.0000
total_estimate	0.8363
solution_quality	GOOD a GOOD solution
n_peaks	1
r_peak_primary	47.8 Å
skewness	-0.031
kurtosis	-0.642
angular_range	— – 0.2300 Å⁻¹
current_alpha	0.0000
highest_alpha	44970000.0000
n_real_points	47
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.962; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.982; Smooth: 0.000

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4. Crystallography & Experiment

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5. Entities & Polymer Info (2)

Entity 1 polymer

description	PLASMIN
formula_weight	27319.4 kDa
ec_number	3.4.21.7
mutation	S741A
src_method	man
entity_count	2

Polymer

type	polypeptide(L)
strand_id	A,B
atom_count	8940

AAPSFDCGKPQVEPKKCPGRVVGGCVAHPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCLEKSPRPSSYKVILGAHQEVNLEPHVQEIEVSRLFLEPTRKDIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGETQGTFGAGLLKEAQLPVIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQGDAGGPLVCFEKDKYILQGVTSWGLGCARPNKPGVYVRVSRFVTWIEGVMRNN

Source

organism	Homo sapiens
common_name	human
ncbi_taxonomy_id	9606
host_organism	Escherichia coli BL21

Entity 2 polymer

description	STREPTOKINASE
formula_weight	41158.9 kDa
src_method	nat
entity_count	2

Polymer

type	polypeptide(L)
strand_id	C,D

SVNNSQLVVSVAGTVEGTNQDISLKFFEIDLTSRPAHGGKTEQGLSPKSKPFATDSGAMPHKLEKADLLKAIQEQLIANVHSNDDYFEVIDFASDATITDRNGKVYFADKDGSVTLPTQPVQEFLLSGHVRVRPYKEKPIQNQAKSVDVEYTVQFTPLNPDDDFRPGLKDTKLLKTLAIGDTITSQELLAQAQSILNKTHPGYTIYERDSSIVTHDNDIFRTILPMDQEFTYHVKNREQAYEINKKSGLNEEINNTDLISEKYYVLKKGEKPYDPFDRSHLKLFTIKYVDVNTNELLKSEQLLTASERNLDFRDLYDPRDKAKLLYNNLDAFGIMDYTLTGKVEDNHDDTNRIITVYMGKRP

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6. Citations (1)

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length_a	80.030 Å
length_b	125.050 Å
length_c	86.790 Å
angle_alpha	90.00 °
angle_beta	105.41 °
angle_gamma	90.00 °
z_pdb	4

space_group	P 1 21 1
int_tables_number	4
crystal_system	—

resolution	2.900 Å
resolution_low	20.000 Å
r_factor	0.2010
r_work	0.2010
r_free	0.2910

fit	/app/data/saxs_computation/bm/1bml/1bml.fit
pddf	/app/data/pr_computation/bm/1bml/1bml.pr.out
profile	/app/data/saxs_computation/bm/1bml/1bml.dat

COMPLEX OF THE CATALYTIC DOMAIN OF HUMAN PLASMIN AND STREPTOKINASE

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction

5. Entities & Polymer Info (2)

Entity 1 polymer

Polymer

Source

Entity 2 polymer

Polymer

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)