PHOSPHATIDYLINOSITOL PHOSPHATE KINASE TYPE II BETA

Method: X-RAY DIFFRACTION D_max: 115.4 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	1bo1
deposition_date	1998-08-02
title	PHOSPHATIDYLINOSITOL PHOSPHATE KINASE TYPE II BETA
keywords	LIPID SIGNALING, TRANSFERASE; TRANSFERASE
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	34.04 Å
rg_electron	33.68 Å
i0	88941600.00
molecular_weight	75088.0 kDa
excluded_volume	93916 Å³
envelope_volume	127880 Å³
shell_volume	33243 Å³
envelope_diameter	115.2 Å
shell_rg	38.26 Å
envelope_rg	34.13 Å
shape_rg	33.67 Å
total_rg	34.09 Å
total_atoms	5282
n_residues	644
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	115.4 Å
rg_real	34.33 Å
rg_real_error	1.14 Å
i0_real	8.8940e+07
i0_real_error	1.5810e+06
rg_reciprocal	34.15 Å
i0_reciprocal	88930000.0000
total_estimate	0.8017
solution_quality	GOOD a GOOD solution
n_peaks	1
r_peak_primary	29.5 Å
skewness	0.513
kurtosis	-0.541
angular_range	— – 0.2350 Å⁻¹
current_alpha	0.0000
highest_alpha	48420000.0000
n_real_points	48
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.651; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.565; Smooth: 0.900

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4. Crystallography & Experiment

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5. Entities & Polymer Info (2)

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6. Citations (1)

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length_a	109.915 Å
length_b	182.403 Å
length_c	106.472 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	16

space_group	C 2 2 21
int_tables_number	20
crystal_system	—

resolution	3.000 Å
resolution_low	6.000 Å
r_factor	0.2290
r_work	0.2290
r_free	0.2990

description	PROTEIN (PHOSPHATIDYLINOSITOL PHOSPHATE KINASE IIBETA)
formula_weight	47447.9 kDa
ec_number	2.7.1.68
src_method	man
entity_count	2

type	polypeptide(L)
strand_id	A,B
atom_count	5301

PHOSPHATIDYLINOSITOL PHOSPHATE KINASE TYPE II BETA

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction

5. Entities & Polymer Info (2)

Entity 1 polymer

Polymer

Source

Entity 2 water

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)

organism	Homo sapiens
common_name	human
ncbi_taxonomy_id	9606
host_organism	Escherichia coli

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	19

fit	/app/data/saxs_computation/bo/1bo1/1bo1.fit
pddf	/app/data/pr_computation/bo/1bo1/1bo1.pr.out
profile	/app/data/saxs_computation/bo/1bo1/1bo1.dat