PVUII DNA METHYLTRANSFERASE (CYTOSINE-N4-SPECIFIC)

Method: X-RAY DIFFRACTION D_max: 62.2 Å Quality: EXCELLENT

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	1boo
deposition_date	1998-07-31
title	PVUII DNA METHYLTRANSFERASE (CYTOSINE-N4-SPECIFIC)
keywords	;TYPE II DNA-(CYTOSINE N4) METHYLTRANSFERASE, AMINO METHYLATION, SELENOMETHIONINE, MULTIWAVELENGTH ANOMALOUS DIFFRACTION, TRANSFERASE ;; TRANSFERASE
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	20.09 Å
rg_electron	19.01 Å
i0	16377600.00
molecular_weight	31742.0 kDa
excluded_volume	40191 Å³
envelope_volume	46385 Å³
shell_volume	20305 Å³
envelope_diameter	63.3 Å
shell_rg	25.56 Å
envelope_rg	19.36 Å
shape_rg	18.97 Å
total_rg	20.08 Å
total_atoms	2245
n_residues	282
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	62.2 Å
rg_real	19.99 Å
rg_real_error	0.28 Å
i0_real	1.6380e+07
i0_real_error	1.9410e+05
rg_reciprocal	20.01 Å
i0_reciprocal	16380000.0000
total_estimate	0.9059
solution_quality	EXCELLENT a EXCELLENT solution
n_peaks	2
r_peak_primary	24.9 Å
skewness	0.187
kurtosis	-0.441
angular_range	— – 0.3950 Å⁻¹
current_alpha	0.0000
highest_alpha	3157000.0000
n_real_points	71
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.928; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.991; Smooth: 0.996

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4. Crystallography & Experiment

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5. Entities & Polymer Info (2)

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6. Citations (2)

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length_a	48.800 Å
length_b	112.400 Å
length_c	59.300 Å
angle_alpha	90.00 °
angle_beta	109.20 °
angle_gamma	90.00 °
z_pdb	2

space_group	P 1 21 1
int_tables_number	4
crystal_system	—

resolution	2.800 Å
resolution_low	30.000 Å
r_factor	0.1930
r_work	0.1930
r_free	0.2830

description	PROTEIN (N-4 CYTOSINE-SPECIFIC METHYLTRANSFERASE PVU II)
formula_weight	36956.2 kDa
ec_number	2.1.1.113
mutation	N TERMIANL DELETION (RESIDUES 1-13)
src_method	man
entity_count	1

type	polypeptide(L)
strand_id	A
atom_count	2245

PVUII DNA METHYLTRANSFERASE (CYTOSINE-N4-SPECIFIC)

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction

5. Entities & Polymer Info (2)

Entity 1 polymer

Polymer

Source

Entity 2 non-polymer

6. Citations (2)

7. Files & Curves (10)

Files (7)

Curves (3)

organism	Proteus vulgaris
ncbi_taxonomy_id	585
host_organism	Escherichia coli str. K-12 substr. DH10B

description	S-ADENOSYL-L-HOMOCYSTEINE
formula_weight	384.4 kDa
src_method	syn
entity_count	1

fit	/app/data/saxs_computation/bo/1boo/1boo.fit
pddf	/app/data/pr_computation/bo/1boo/1boo.pr.out
profile	/app/data/saxs_computation/bo/1boo/1boo.dat