THE STRUCTURE OF THE D-GLUCARATE DEHYDRATASE PROTEIN FROM PSEUDOMONAS PUTIDA

Method: X-RAY DIFFRACTION D_max: 68.7 Å Quality: EXCELLENT

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	1bqg
deposition_date	1998-08-15
title	THE STRUCTURE OF THE D-GLUCARATE DEHYDRATASE PROTEIN FROM PSEUDOMONAS PUTIDA
keywords	GLUCARATE, TIM BARREL, ENOLASE SUPERFAMILY; GLUCARATE
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	21.97 Å
rg_electron	20.84 Å
i0	32264600.00
molecular_weight	43007.0 kDa
excluded_volume	53483 Å³
envelope_volume	61365 Å³
shell_volume	24068 Å³
envelope_diameter	71.4 Å
shell_rg	27.84 Å
envelope_rg	21.02 Å
shape_rg	20.83 Å
total_rg	21.72 Å
total_atoms	3033
n_residues	399
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	68.7 Å
rg_real	21.83 Å
rg_real_error	0.32 Å
i0_real	3.2260e+07
i0_real_error	3.7920e+05
rg_reciprocal	21.86 Å
i0_reciprocal	32270000.0000
total_estimate	0.9019
solution_quality	EXCELLENT a EXCELLENT solution
n_peaks	2
r_peak_primary	26.6 Å
skewness	0.177
kurtosis	-0.473
angular_range	— – 0.3600 Å⁻¹
current_alpha	0.0000
highest_alpha	9164000.0000
n_real_points	68
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.917; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.998; Smooth: 0.971

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4. Crystallography & Experiment

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5. Entities & Polymer Info (2)

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6. Citations (1)

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length_a	69.623 Å
length_b	108.786 Å
length_c	122.573 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	8

space_group	I 2 2 2
int_tables_number	23
crystal_system	—

resolution	2.300 Å
resolution_low	30.000 Å
r_factor	—
r_work	0.1900
r_free	—

description	D-GLUCARATE DEHYDRATASE
formula_weight	49632.0 kDa
ec_number	4.2.1.40
src_method	man
entity_count	1

type	polypeptide(L)
strand_id	A
atom_count	3178

THE STRUCTURE OF THE D-GLUCARATE DEHYDRATASE PROTEIN FROM PSEUDOMONAS PUTIDA

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction

5. Entities & Polymer Info (2)

Entity 1 polymer

Polymer

Source

Entity 2 water

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)

organism	Pseudomonas putida
ncbi_taxonomy_id	303
host_organism	Escherichia coli

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	145

fit	/app/data/saxs_computation/bq/1bqg/1bqg.fit
pddf	/app/data/pr_computation/bq/1bqg/1bqg.pr.out
profile	/app/data/saxs_computation/bq/1bqg/1bqg.dat