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1bvo

DORSAL HOMOLOGUE GAMBIF1 BOUND TO DNA

Method: X-RAY DIFFRACTION D_max: 76.6 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	1bvo
deposition_date	1998-09-16
title	DORSAL HOMOLOGUE GAMBIF1 BOUND TO DNA
keywords	;TRANSCRIPTION FACTOR, REL PROTEIN, MORPHOGEN, IMMUNITY, DEVELOPMENT, INSECTS, COMPLEX (TRANSCRIPTION FACTOR-DNA), COMPLEX (TRANSCRIPTION FACTOR-DNA) complex ;; COMPLEX (TRANSCRIPTION FACTOR/DNA)
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	21.28 Å
rg_electron	20.30 Å
i0	20815200.00
molecular_weight	28756.0 kDa
excluded_volume	33335 Å³
envelope_volume	37166 Å³
shell_volume	17037 Å³
envelope_diameter	79.4 Å
shell_rg	24.83 Å
envelope_rg	19.88 Å
shape_rg	20.26 Å
total_rg	20.90 Å
total_atoms	1986
n_residues	205
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	76.6 Å
rg_real	21.36 Å
rg_real_error	0.70 Å
i0_real	2.0820e+07
i0_real_error	2.8010e+05
rg_reciprocal	21.35 Å
i0_reciprocal	20820000.0000
total_estimate	0.8564
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	24.8 Å
skewness	0.419
kurtosis	-0.070
angular_range	— – 0.3750 Å⁻¹
current_alpha	0.0000
highest_alpha	448000.0000
n_real_points	69
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.749; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.893; Smooth: 0.988

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4. Crystallography & Experiment

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5. Entities & Polymer Info (4)

Entity 1 polymer

description	DNA DUPLEX
formula_weight	4585.0 kDa
src_method	syn
entity_count	1

Polymer

type	polydeoxyribonucleotide
strand_id	D
atom_count	2022

CTGGGAATTTCCCAG

Entity 2 polymer

description	DNA DUPLEX
formula_weight	4594.0 kDa
src_method	syn
entity_count	1

Polymer

type	polydeoxyribonucleotide
strand_id	E

CTGGGTTAAACCCAG

Entity 3 polymer

description	TRANSCRIPTION FACTOR GAMBIF1
formula_weight	19627.4 kDa
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	A

PYVEITEQPHPKALRFRYECEGRSAGSIPGVNTTAEQKTFPSIQVHGYRGRAVVVVSCVTKEGPEHKPHPHNLVGKEGCKKGVCTVEINSTTMSYTFNNLGIQCVKKKDVEEALRLRQEIRVDPFRTGFGHAKEPGSIDLNAVRLCFQVFLEGQQRGRFTEPLTPVVSDIIYDKK

Source

organism	Anopheles gambiae
common_name	African malaria mosquito
ncbi_taxonomy_id	7165
host_organism	Escherichia coli BL21(DE3)

Entity 4 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	36

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6. Citations (1)

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length_a	87.610 Å
length_b	87.610 Å
length_c	96.160 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	8

space_group	P 43 2 2
int_tables_number	95
crystal_system	—

resolution	2.700 Å
resolution_low	10.000 Å
r_factor	0.2190
r_work	0.2190
r_free	0.2880

fit	/app/data/saxs_computation/bv/1bvo/1bvo.fit
pddf	/app/data/pr_computation/bv/1bvo/1bvo.pr.out
profile	/app/data/saxs_computation/bv/1bvo/1bvo.dat

DORSAL HOMOLOGUE GAMBIF1 BOUND TO DNA

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction

5. Entities & Polymer Info (4)

Entity 1 polymer

Polymer

Entity 2 polymer

Polymer

Entity 3 polymer

Polymer

Source

Entity 4 water

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)