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1bwg

;DNA TRIPLEX WITH 5' AND 3' JUNCTIONS, NMR, 10 STRUCTURES ;

Method: SOLUTION NMR D_max: 41.6 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	1bwg
deposition_date	1998-09-22
title	;DNA TRIPLEX WITH 5' AND 3' JUNCTIONS, NMR, 10 STRUCTURES ;
keywords	DEOXYRIBONUCLEIC ACID, DNA TRIPLEX, TRIPLEX-DUPLEX JUNCTIONS, DNA; DNA
method	SOLUTION NMR

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	13.64 Å
rg_electron	13.63 Å
i0	404938000.00
molecular_weight	102730.0 kDa
excluded_volume	100580 Å³
envelope_volume	16615 Å³
shell_volume	10660 Å³
envelope_diameter	48.5 Å
shell_rg	18.85 Å
envelope_rg	14.24 Å
shape_rg	13.51 Å
total_rg	13.92 Å
total_atoms	10720
n_residues	340
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	41.6 Å
rg_real	13.69 Å
rg_real_error	0.30 Å
i0_real	4.0490e+08
i0_real_error	4.0410e+06
rg_reciprocal	13.69 Å
i0_reciprocal	404900000.0000
total_estimate	0.8852
solution_quality	GOOD a GOOD solution
n_peaks	3
r_peak_primary	14.8 Å
skewness	0.482
kurtosis	-0.129
angular_range	— – 0.5000 Å⁻¹
current_alpha	0.0000
highest_alpha	304800.0000
n_real_points	80
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.880; Stabil: 0.996; Sysdev: 1.000; Positv: 1.000; Valcen: 0.990; Smooth: 0.885

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4. Crystallography & Experiment

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5. Entities & Polymer Info (3)

Entity 1 polymer

description	;DNA (5'-D(GPAPCPTPGPAPGPAPGPAPCPGPTPA)-3') ;
formula_weight	4353.9 kDa
src_method	syn
entity_count	1

Polymer

type	polydeoxyribonucleotide
strand_id	A
atom_count	10720

GACTGAGAGACGTA

Entity 2 polymer

description	;DNA (5'-D(TPAPCPGPTPCPTPCPTPCPAPGPTPC)-3') ;
formula_weight	4206.7 kDa
src_method	syn
entity_count	1

Polymer

type	polydeoxyribonucleotide
strand_id	B

TACGTCTCTCAGTC

Entity 3 polymer

description	;DNA (5'-D(CPTPCPTPCPT)-3') ;
formula_weight	1735.2 kDa
src_method	syn
entity_count	1

Polymer

type	polydeoxyribonucleotide
strand_id	C

CTCTCT

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6. Citations (2)

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length_a	1.000 Å
length_b	1.000 Å
length_c	1.000 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	1

space_group	P 1
int_tables_number	1
crystal_system	—

fit	/app/data/saxs_computation/bw/1bwg/1bwg.fit
pddf	/app/data/pr_computation/bw/1bwg/1bwg.pr.out
profile	/app/data/saxs_computation/bw/1bwg/1bwg.dat

;DNA TRIPLEX WITH 5' AND 3' JUNCTIONS, NMR, 10 STRUCTURES ;

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

5. Entities & Polymer Info (3)

Entity 1 polymer

Polymer

Entity 2 polymer

Polymer

Entity 3 polymer

Polymer

6. Citations (2)

7. Files & Curves (10)

Files (7)

Curves (3)