1byx
;CHIMERIC HYBRID DUPLEX R(GCAGUGGC).R(GCCA)D(CTGC) COMPRISING THE TRNA-DNA JUNCTION FORMED DURING INITIATION OF HIV-1 REVERSE TRANSCRIPTION ;
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 1byx |
| deposition_date | 1998-10-20 |
| title | ;CHIMERIC HYBRID DUPLEX R(GCAGUGGC).R(GCCA)D(CTGC) COMPRISING THE TRNA-DNA JUNCTION FORMED DURING INITIATION OF HIV-1 REVERSE TRANSCRIPTION ; |
| keywords | RNA:RNA-DNA CHIMERIC HYBRID, RNASE H, REVERSE TRANSCRIPTASE, DNA-RNA COMPLEX, DNA-RNA HYBRID; DNA-RNA HYBRID |
| method | SOLUTION NMR |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 10.65 Å |
| rg_electron | 10.66 Å |
| i0 | 416047000.00 |
| molecular_weight | 100230.0 kDa |
| excluded_volume | 95320 ų |
| envelope_volume | 9746 ų |
| shell_volume | 7501 ų |
| envelope_diameter | 38.1 Å |
| shell_rg | 16.60 Å |
| envelope_rg | 12.07 Å |
| shape_rg | 10.54 Å |
| total_rg | 10.95 Å |
| total_atoms | 10260 |
| n_residues | 320 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 34.9 Å |
| rg_real | 10.63 Å |
| rg_real_error | 0.40 Å |
| i0_real | 4.1600e+08 |
| i0_real_error | 4.3810e+06 |
| rg_reciprocal | 10.63 Å |
| i0_reciprocal | 416000000.0000 |
| total_estimate | 0.8915 |
| solution_quality | GOOD a GOOD solution |
| n_peaks | 2 |
| r_peak_primary | 14.6 Å |
| skewness | 0.192 |
| kurtosis | -0.366 |
| angular_range | — – 0.5000 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 25570.0000 |
| n_real_points | 80 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.887; Stabil: 0.999; Sysdev: 1.000; Positv: 1.000; Valcen: 0.978; Smooth: 0.949 |