← Back to search

1bz7

FAB FRAGMENT FROM MURINE ASCITES

Method: X-RAY DIFFRACTION D_max: 76.7 Å Quality: EXCELLENT

SAXS Profile

P(r) Distribution

▼

1. Structure Basics

entry_id	1bz7
deposition_date	1998-11-06
title	FAB FRAGMENT FROM MURINE ASCITES
keywords	ANTIBODY (FAB FRAGMENT), IMMUNE SYSTEM; IMMUNE SYSTEM
method	X-RAY DIFFRACTION

▼

Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

▼

2. SAXS Parameters (CRYSOL)

rg_guinier	25.15 Å
rg_electron	24.25 Å
i0	35385200.00
molecular_weight	45696.0 kDa
excluded_volume	57006 Å³
envelope_volume	70429 Å³
shell_volume	24418 Å³
envelope_diameter	76.8 Å
shell_rg	31.31 Å
envelope_rg	23.78 Å
shape_rg	24.23 Å
total_rg	25.12 Å
total_atoms	3219
n_residues	423
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

▼

3. P(r) Analysis (GNOM)

dmax	76.7 Å
rg_real	25.09 Å
rg_real_error	0.43 Å
i0_real	3.5390e+07
i0_real_error	4.5550e+05
rg_reciprocal	25.11 Å
i0_reciprocal	35390000.0000
total_estimate	0.9150
solution_quality	EXCELLENT a EXCELLENT solution
n_peaks	2
r_peak_primary	29.2 Å
skewness	0.197
kurtosis	-0.608
angular_range	— – 0.3150 Å⁻¹
current_alpha	0.0000
highest_alpha	5221000.0000
n_real_points	64
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.981; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.992; Smooth: 0.957

▶

4. Crystallography & Experiment

▶

5. Entities & Polymer Info (3)

Entity 1 polymer

description	PROTEIN (ANTIBODY R24 (LIGHT CHAIN))
formula_weight	22715.3 kDa
src_method	nat
entity_count	1

Polymer

type	polypeptide(L)
strand_id	A
atom_count	3232

DIQMTQITSSLSVSLGDRVIISCRASQDIGNFLNWYQQKPDGSLKLLIYYTSRLQSGVPSRFSGWGSGTDYSLTISNLEEEDIATFFCQQGKTLPYTFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVT

Entity 2 polymer

description	PROTEIN (ANTIBODY R24 (HEAVY CHAIN))
formula_weight	23018.7 kDa
src_method	nat
entity_count	1

Polymer

type	polypeptide(L)
strand_id	B

DVQLVESGGGLVQPGGSRKLSCAASGFTFSNFGMHWVRQAPEKGLEWVAYISSGGSSINYADTVKGRFTISRDNPKNTLFLQMTSLRSEDTAIYYCTRGGTGTRSLYYFDYWGQGATLIVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDK

Entity 3 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	13

▶

6. Citations (1)

▶

length_a	146.800 Å
length_b	56.000 Å
length_c	80.000 Å
angle_alpha	90.00 °
angle_beta	119.20 °
angle_gamma	90.00 °
z_pdb	4

space_group	C 1 2 1
int_tables_number	5
crystal_system	—

resolution	2.500 Å
resolution_low	6.000 Å
r_factor	0.1620
r_work	0.1620
r_free	—

fit	/app/data/saxs_computation/bz/1bz7/1bz7.fit
pddf	/app/data/pr_computation/bz/1bz7/1bz7.pr.out
profile	/app/data/saxs_computation/bz/1bz7/1bz7.dat

FAB FRAGMENT FROM MURINE ASCITES

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction

5. Entities & Polymer Info (3)

Entity 1 polymer

Polymer

Entity 2 polymer

Polymer

Entity 3 water

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)