1c2x
5S RRNA STRUCTURE FITTED TO A CRYO-ELECTRON MICROSCOPIC MAP AT 7.5 ANGSTROMS RESOLUTION
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 1c2x |
| deposition_date | 1999-07-28 |
| title | 5S RRNA STRUCTURE FITTED TO A CRYO-ELECTRON MICROSCOPIC MAP AT 7.5 ANGSTROMS RESOLUTION |
| keywords | ;5S RRNA, 23S RRNA, RIBOSOME, LARGE RIBOSOMAL SUBUNIT, PROTEIN BIOSYNTHESIS, RIBONUCLEIC ACID, EM-RECONSTRUCTION, ATOMIC STRUCTURE, 3D ARRANGEMENT, FITTING ;; RIBOSOME |
| method | ELECTRON MICROSCOPY |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 32.17 Å |
| rg_electron | 32.97 Å |
| i0 | 73214200.00 |
| molecular_weight | 38973.0 kDa |
| excluded_volume | 36293 ų |
| envelope_volume | 66250 ų |
| shell_volume | 20096 ų |
| envelope_diameter | 120.0 Å |
| shell_rg | 32.88 Å |
| envelope_rg | 33.78 Å |
| shape_rg | 32.91 Å |
| total_rg | 33.04 Å |
| total_atoms | 2576 |
| n_residues | 120 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 118.5 Å |
| rg_real | 32.84 Å |
| rg_real_error | 1.58 Å |
| i0_real | 7.3210e+07 |
| i0_real_error | 1.3070e+06 |
| rg_reciprocal | 32.56 Å |
| i0_reciprocal | 73200000.0000 |
| total_estimate | 0.7483 |
| solution_quality | REASONABLE a REASONABLE solution |
| n_peaks | 1 |
| r_peak_primary | 24.2 Å |
| skewness | 0.624 |
| kurtosis | -0.262 |
| angular_range | — – 0.2450 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 1513000.0000 |
| n_real_points | 50 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.550; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.258; Smooth: 0.817 |