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1c5c

DECARBOXYLASE CATALYTIC ANTIBODY 21D8-HAPTEN COMPLEX

Method: X-RAY DIFFRACTION D_max: 79.1 Å Quality: EXCELLENT

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	1c5c
deposition_date	1999-11-09
title	DECARBOXYLASE CATALYTIC ANTIBODY 21D8-HAPTEN COMPLEX
keywords	IMMUNOGLOBULIN, CATALYTIC ANTIBODY, CHIMERIC FAB, DECARBOXYLASE, HAPTEN COMPLEX, IMMUNE SYSTEM; IMMUNE SYSTEM
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	25.51 Å
rg_electron	24.52 Å
i0	38046300.00
molecular_weight	47010.0 kDa
excluded_volume	58524 Å³
envelope_volume	72663 Å³
shell_volume	24881 Å³
envelope_diameter	81.6 Å
shell_rg	31.63 Å
envelope_rg	24.20 Å
shape_rg	24.49 Å
total_rg	25.43 Å
total_atoms	3304
n_residues	429
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	79.1 Å
rg_real	25.48 Å
rg_real_error	0.56 Å
i0_real	3.8050e+07
i0_real_error	5.1480e+05
rg_reciprocal	25.49 Å
i0_reciprocal	38050000.0000
total_estimate	0.9123
solution_quality	EXCELLENT a EXCELLENT solution
n_peaks	2
r_peak_primary	28.1 Å
skewness	0.257
kurtosis	-0.563
angular_range	— – 0.3100 Å⁻¹
current_alpha	0.0000
highest_alpha	9162000.0000
n_real_points	63
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.966; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.993; Smooth: 0.963

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4. Crystallography & Experiment

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5. Entities & Polymer Info (5)

Entity 1 polymer

description	CHIMERIC DECARBOXYLASE ANTIBODY 21D8
formula_weight	23547.1 kDa
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	L
atom_count	3642

EIQLTQSPSSLSASLGERVSLTCRTSQEISGYLSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGSRSGSDYSLTISSLESEDFADYYCLQYASFPRTFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC

Source

organism	Mus musculus, Homo sapiens
common_name	house mouse, human
host_organism	Escherichia coli

Entity 2 polymer

description	CHIMERIC DECARBOXYLASE ANTIBODY 21D8
formula_weight	22973.8 kDa
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	H

QVQLLEPGTELVKPGASVKLSCRASGYSFTSYWMHWVKQRPGQGLEWIGLIDPSNGRTNFNDKFKSRATLTVDTSSSTAYMQLSSLTSEDSAVYYCVRIAYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC

Source

organism	Mus musculus, Homo sapiens
common_name	house mouse, human
host_organism	Escherichia coli

Entity 3 non-polymer

description	2-ACETYLAMINO-NAPTHALENE-1,5-DISULFONIC ACID
formula_weight	345.3 kDa
src_method	syn
entity_count	1

Entity 4 non-polymer

description	GLYCEROL
formula_weight	92.1 kDa
src_method	syn
entity_count	2

Entity 5 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	311

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6. Citations (1)

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length_a	39.217 Å
length_b	43.932 Å
length_c	221.205 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	4

space_group	P 21 21 21
int_tables_number	19
crystal_system	—

resolution	1.610 Å
resolution_low	10.000 Å
r_factor	0.1934
r_work	—
r_free	0.2529

fit	/app/data/saxs_computation/c5/1c5c/1c5c.fit
pddf	/app/data/pr_computation/c5/1c5c/1c5c.pr.out
profile	/app/data/saxs_computation/c5/1c5c/1c5c.dat

DECARBOXYLASE CATALYTIC ANTIBODY 21D8-HAPTEN COMPLEX

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction

5. Entities & Polymer Info (5)

Entity 1 polymer

Polymer

Source

Entity 2 polymer

Polymer

Source

Entity 3 non-polymer

Entity 4 non-polymer

Entity 5 water

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)