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1c7g

TYROSINE PHENOL-LYASE FROM ERWINIA HERBICOLA

Method: X-RAY DIFFRACTION D_max: 115.8 Å Quality: EXCELLENT

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	1c7g
deposition_date	2000-02-18
title	TYROSINE PHENOL-LYASE FROM ERWINIA HERBICOLA
keywords	;LYASE, TYROSINE DEGRADATION, PYRIDOXAL 5'-PHOSPHATE DEPENDENT ;; LYASE
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	37.06 Å
rg_electron	36.39 Å
i0	645715000.00
molecular_weight	206350.0 kDa
excluded_volume	257390 Å³
envelope_volume	306720 Å³
shell_volume	65847 Å³
envelope_diameter	117.9 Å
shell_rg	45.70 Å
envelope_rg	36.57 Å
shape_rg	36.41 Å
total_rg	36.81 Å
total_atoms	14480
n_residues	1824
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	115.8 Å
rg_real	36.86 Å
rg_real_error	0.65 Å
i0_real	6.4570e+08
i0_real_error	9.4500e+06
rg_reciprocal	36.99 Å
i0_reciprocal	645800000.0000
total_estimate	0.9021
solution_quality	EXCELLENT a EXCELLENT solution
n_peaks	1
r_peak_primary	45.8 Å
skewness	0.163
kurtosis	-0.536
angular_range	— – 0.2150 Å⁻¹
current_alpha	0.0000
highest_alpha	215100000.0000
n_real_points	44
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.929; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.994; Smooth: 0.943

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4. Crystallography & Experiment

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5. Entities & Polymer Info (3)

Entity 1 polymer

description	TYROSINE PHENOL-LYASE
formula_weight	51429.6 kDa
ec_number	4.1.99.2
src_method	man
entity_count	4

Polymer

type	polypeptide(L)
strand_id	A,B,C,D
atom_count	14905

MNYPAEPFRIKSVETVSMISRDERVKKMQEAGYNTFLLNSKDIYIDLLTDSGTNAMSDKQWAGMMIGDEAYAGSENFYHLEKTVKELFGFKHIVPTHQGRGAENLLSQLAIKPGQYVAGNMYFTTTRFHQEKNGATFVDIVRDEAHDASLNLPFKGDIDLNKLATLIKEKGAENIAYICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIFYDATRCVENAYFIKEQEAGYENVSIKDIVHEMFSYADGCTMSGKKDCLVNIGGFLCMNDEEMFSAAKELVVVYEGMPSYGGLAGRDMEAMAIGLREAMQYEYIEHRVKQVRYLGDKLREAGVPIVEPTGGHAVFLDARRFCPHLTQDQFPAQSLAASIYMETGVRSMERGIVSAGRSKETGENHRPKLETVRLTIPRRVYTYAHMDVVADGIIKLYQHKEDIRGLTFVYEPKQLRFFTARFDFI

Source

organism	Pantoea agglomerans pv. gypsophilae
ncbi_taxonomy_id	48984
host_organism	Escherichia coli

Entity 2 non-polymer

description	PYRIDOXAL-5'-PHOSPHATE
formula_weight	247.1 kDa
src_method	syn
entity_count	4

Entity 3 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	425

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6. Citations (1)

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length_a	163.490 Å
length_b	113.040 Å
length_c	101.090 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	16

space_group	P 21 21 2
int_tables_number	18
crystal_system	—

resolution	2.100 Å
resolution_low	8.000 Å
r_factor	0.1862
r_work	0.1862
r_free	0.2420

fit	/app/data/saxs_computation/c7/1c7g/1c7g.fit
pddf	/app/data/pr_computation/c7/1c7g/1c7g.pr.out
profile	/app/data/saxs_computation/c7/1c7g/1c7g.dat

TYROSINE PHENOL-LYASE FROM ERWINIA HERBICOLA

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction